Gene : Glyma.13G372100 G. max Wm82.a2.v1
Defline:  (1 of 12) KOG1397 - Ca2+/H+ antiporter VCX1 and related proteins Genomic Order:  3721
Name:  ? Glyma.13G372100 Secondary Identifier:  ? PAC:30501680
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G372100 0.5kb upstream 0.5kb upstream 12665 true Chr13: 45707806-45720470 Glycine max
Glyma.13G372100 0.5kb upstream 0.5kb upstream 500 false Chr13: 45707806-45708305 Glycine max
Glyma.13G372100 0.5kb downstream 0.5kb downstream 12665 true Chr13: 45708306-45720970 Glycine max
Glyma.13G372100 0.5kb downstream 0.5kb downstream 500 false Chr13: 45720471-45720970 Glycine max
Glyma.13G372100 1.0kb upstream 1.0kb upstream 13165 true Chr13: 45707306-45720470 Glycine max
Glyma.13G372100 1.0kb upstream 1.0kb upstream 1000 false Chr13: 45707306-45708305 Glycine max
Glyma.13G372100 1.0kb downstream 1.0kb downstream 13165 true Chr13: 45708306-45721470 Glycine max
Glyma.13G372100 1.0kb downstream 1.0kb downstream 1000 false Chr13: 45720471-45721470 Glycine max
Glyma.13G372100 2.0kb upstream 2.0kb upstream 14165 true Chr13: 45706306-45720470 Glycine max
Glyma.13G372100 2.0kb upstream 2.0kb upstream 2000 false Chr13: 45706306-45708305 Glycine max
Glyma.13G372100 2.0kb downstream 2.0kb downstream 14165 true Chr13: 45708306-45722470 Glycine max
Glyma.13G372100 2.0kb downstream 2.0kb downstream 2000 false Chr13: 45720471-45722470 Glycine max
Glyma.13G372100 5.0kb upstream 5.0kb upstream 17165 true Chr13: 45703306-45720470 Glycine max
Glyma.13G372100 5.0kb upstream 5.0kb upstream 5000 false Chr13: 45703306-45708305 Glycine max
Glyma.13G372100 5.0kb downstream 5.0kb downstream 17165 true Chr13: 45708306-45725470 Glycine max
Glyma.13G372100 5.0kb downstream 5.0kb downstream 5000 false Chr13: 45720471-45725470 Glycine max
Glyma.13G372100 10.0kb upstream 10.0kb upstream 22165 true Chr13: 45698306-45720470 Glycine max
Glyma.13G372100 10.0kb upstream 10.0kb upstream 10000 false Chr13: 45698306-45708305 Glycine max
Glyma.13G372100 10.0kb downstream 10.0kb downstream 22165 true Chr13: 45708306-45730470 Glycine max
Glyma.13G372100 10.0kb downstream 10.0kb downstream 10000 false Chr13: 45720471-45730470 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313363 5265 Fabidae View MSA
124071439 5270 Rosid View MSA
123747660 5271 Pentapetalae View MSA
122792881 5272 Eudicot View MSA
122045212 5273 Angiosperm View MSA
121347037 5274 Embryophyte View MSA
123427763 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.3639 0.0 57.037    
cufflinks 10.6846 0.0 28.9623   Low
cufflinks 14.5715 0.0 38.9654    
cufflinks 13.7679 0.0 36.9145    
cufflinks 20.2909 0.0 54.1435 High  
cufflinks 24.251 0.0 64.93 High High
cufflinks 10.2791 0.0 27.9719   Low
cufflinks 20.2806 0.0 54.1228    
cufflinks 16.508 0.0 44.0754    
cufflinks 4.954       High
cufflinks 2.242        
cufflinks 1.732       Low
cufflinks 3.946       High
cufflinks 4.364       High
cufflinks 2.239        
cufflinks 2.419        
cufflinks 3.336        
cufflinks 1.911       Low
cufflinks 1.97       Low
cufflinks 2.495        
cufflinks 2.482        
cufflinks 2.505        
cufflinks 2.571        
cufflinks 3.218        
cufflinks 2.3        
cufflinks 3.041        

0 Strain