Gene : Glyma.13G366100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11140 - PRE-MRNA SPLICING FACTOR PRP8 Genomic Order:  3661
Name:  ? Glyma.13G366100 Secondary Identifier:  ? PAC:30501452
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G366100 0.5kb upstream 0.5kb upstream 12063 true Chr13: 45198080-45210142 Glycine max
Glyma.13G366100 0.5kb upstream 0.5kb upstream 500 false Chr13: 45209643-45210142 Glycine max
Glyma.13G366100 0.5kb downstream 0.5kb downstream 12063 true Chr13: 45197580-45209642 Glycine max
Glyma.13G366100 0.5kb downstream 0.5kb downstream 500 false Chr13: 45197580-45198079 Glycine max
Glyma.13G366100 1.0kb upstream 1.0kb upstream 12563 true Chr13: 45198080-45210642 Glycine max
Glyma.13G366100 1.0kb upstream 1.0kb upstream 1000 false Chr13: 45209643-45210642 Glycine max
Glyma.13G366100 1.0kb downstream 1.0kb downstream 12563 true Chr13: 45197080-45209642 Glycine max
Glyma.13G366100 1.0kb downstream 1.0kb downstream 1000 false Chr13: 45197080-45198079 Glycine max
Glyma.13G366100 2.0kb upstream 2.0kb upstream 13563 true Chr13: 45198080-45211642 Glycine max
Glyma.13G366100 2.0kb upstream 2.0kb upstream 2000 false Chr13: 45209643-45211642 Glycine max
Glyma.13G366100 2.0kb downstream 2.0kb downstream 13563 true Chr13: 45196080-45209642 Glycine max
Glyma.13G366100 2.0kb downstream 2.0kb downstream 2000 false Chr13: 45196080-45198079 Glycine max
Glyma.13G366100 5.0kb upstream 5.0kb upstream 16563 true Chr13: 45198080-45214642 Glycine max
Glyma.13G366100 5.0kb upstream 5.0kb upstream 5000 false Chr13: 45209643-45214642 Glycine max
Glyma.13G366100 5.0kb downstream 5.0kb downstream 16563 true Chr13: 45193080-45209642 Glycine max
Glyma.13G366100 5.0kb downstream 5.0kb downstream 5000 false Chr13: 45193080-45198079 Glycine max
Glyma.13G366100 10.0kb upstream 10.0kb upstream 21563 true Chr13: 45198080-45219642 Glycine max
Glyma.13G366100 10.0kb upstream 10.0kb upstream 10000 false Chr13: 45209643-45219642 Glycine max
Glyma.13G366100 10.0kb downstream 10.0kb downstream 21563 true Chr13: 45188080-45209642 Glycine max
Glyma.13G366100 10.0kb downstream 10.0kb downstream 10000 false Chr13: 45188080-45198079 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302399 5265 Fabidae View MSA
124066257 5270 Rosid View MSA
123746836 5271 Pentapetalae View MSA
122793818 5272 Eudicot View MSA
122042233 5273 Angiosperm View MSA
121346316 5274 Embryophyte View MSA
123424107 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.7674 0.0 67.9309    
cufflinks 19.6313 0.0 60.1391    
cufflinks 15.2659 0.0 45.1914    
cufflinks 25.5885 0.0 82.4698 High  
cufflinks 18.6475 0.0 56.5835    
cufflinks 6.43639 0.0 17.3878   Low
cufflinks 27.166 0.0 88.177 High High
cufflinks 18.5764 0.0 56.4681    
cufflinks 15.8622 0.0 47.0095    
cufflinks 14.122     High  
cufflinks 3.062       Low
cufflinks 15.666     High  
cufflinks 16.569     High  
cufflinks 19.155     High  
cufflinks 8.259     High  
cufflinks 14.494     High  
cufflinks 8.952     High  
cufflinks 18.396     High  
cufflinks 24.648     High High
cufflinks 14.708     High  
cufflinks 4.822       Low
cufflinks 16.028     High  
cufflinks 15.5     High  
cufflinks 3.969       Low
cufflinks 14.562     High  
cufflinks 9.065     High  

0 Strain