Gene : Glyma.14G173000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR23160:SF3 - SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED Genomic Order:  1730
Name:  ? Glyma.14G173000 Secondary Identifier:  ? PAC:30533651
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.14G173000 0.5kb upstream 0.5kb upstream 10899 true Chr14: 42769792-42780690 Glycine max
Glyma.14G173000 0.5kb upstream 0.5kb upstream 500 false Chr14: 42780191-42780690 Glycine max
Glyma.14G173000 0.5kb downstream 0.5kb downstream 10899 true Chr14: 42769292-42780190 Glycine max
Glyma.14G173000 0.5kb downstream 0.5kb downstream 500 false Chr14: 42769292-42769791 Glycine max
Glyma.14G173000 1.0kb upstream 1.0kb upstream 11399 true Chr14: 42769792-42781190 Glycine max
Glyma.14G173000 1.0kb upstream 1.0kb upstream 1000 false Chr14: 42780191-42781190 Glycine max
Glyma.14G173000 1.0kb downstream 1.0kb downstream 11399 true Chr14: 42768792-42780190 Glycine max
Glyma.14G173000 1.0kb downstream 1.0kb downstream 1000 false Chr14: 42768792-42769791 Glycine max
Glyma.14G173000 2.0kb upstream 2.0kb upstream 12399 true Chr14: 42769792-42782190 Glycine max
Glyma.14G173000 2.0kb upstream 2.0kb upstream 2000 false Chr14: 42780191-42782190 Glycine max
Glyma.14G173000 2.0kb downstream 2.0kb downstream 12399 true Chr14: 42767792-42780190 Glycine max
Glyma.14G173000 2.0kb downstream 2.0kb downstream 2000 false Chr14: 42767792-42769791 Glycine max
Glyma.14G173000 5.0kb upstream 5.0kb upstream 15399 true Chr14: 42769792-42785190 Glycine max
Glyma.14G173000 5.0kb upstream 5.0kb upstream 5000 false Chr14: 42780191-42785190 Glycine max
Glyma.14G173000 5.0kb downstream 5.0kb downstream 15399 true Chr14: 42764792-42780190 Glycine max
Glyma.14G173000 5.0kb downstream 5.0kb downstream 5000 false Chr14: 42764792-42769791 Glycine max
Glyma.14G173000 10.0kb upstream 10.0kb upstream 20399 true Chr14: 42769792-42790190 Glycine max
Glyma.14G173000 10.0kb upstream 10.0kb upstream 10000 false Chr14: 42780191-42790190 Glycine max
Glyma.14G173000 10.0kb downstream 10.0kb downstream 20399 true Chr14: 42759792-42780190 Glycine max
Glyma.14G173000 10.0kb downstream 10.0kb downstream 10000 false Chr14: 42759792-42769791 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302115 5265 Fabidae View MSA
124068908 5270 Rosid View MSA
123737284 5271 Pentapetalae View MSA
122789700 5272 Eudicot View MSA
122042808 5273 Angiosperm View MSA
121349481 5274 Embryophyte View MSA
123381327 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.081968 0.0 0.319679 Low High
cufflinks 0.051671 0.0 0.204668 Low  
cufflinks 0.0103901 0.0 0.0480011 Low Low
cufflinks 0.0164516 0.0 0.0693131 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0188999 0.0 0.0806322 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0329605 0.0 0.134226 Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low Low
cufflinks 0.02     Low  
cufflinks 0.01     Low  
cufflinks 0.009     Low  
cufflinks 0.004     Low  
cufflinks 0.02     Low  
cufflinks 0.002     Low Low
cufflinks 0.025     Low High
cufflinks 0.028     Low High
cufflinks 0.013     Low  
cufflinks 0.004     Low  
cufflinks 0.016     Low  
cufflinks 0.017     Low  
cufflinks 0.004     Low  
cufflinks 0.014     Low  
cufflinks 0.002     Low Low

0 Strain