Gene : Glyma.14G209700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31480:SF2 - PHYTOENE SYNTHASE, CHLOROPLASTIC Genomic Order:  2097
Name:  ? Glyma.14G209700 Secondary Identifier:  ? PAC:30533398
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CAROTENOID-PWY Glycine max pathologic  
Gmax PWY-6475 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.14G209700 0.5kb upstream 0.5kb upstream 5008 true Chr14: 47496019-47501026 Glycine max
Glyma.14G209700 0.5kb upstream 0.5kb upstream 500 false Chr14: 47500527-47501026 Glycine max
Glyma.14G209700 0.5kb downstream 0.5kb downstream 5008 true Chr14: 47495519-47500526 Glycine max
Glyma.14G209700 0.5kb downstream 0.5kb downstream 500 false Chr14: 47495519-47496018 Glycine max
Glyma.14G209700 1.0kb upstream 1.0kb upstream 5508 true Chr14: 47496019-47501526 Glycine max
Glyma.14G209700 1.0kb upstream 1.0kb upstream 1000 false Chr14: 47500527-47501526 Glycine max
Glyma.14G209700 1.0kb downstream 1.0kb downstream 5508 true Chr14: 47495019-47500526 Glycine max
Glyma.14G209700 1.0kb downstream 1.0kb downstream 1000 false Chr14: 47495019-47496018 Glycine max
Glyma.14G209700 2.0kb upstream 2.0kb upstream 6508 true Chr14: 47496019-47502526 Glycine max
Glyma.14G209700 2.0kb upstream 2.0kb upstream 2000 false Chr14: 47500527-47502526 Glycine max
Glyma.14G209700 2.0kb downstream 2.0kb downstream 6508 true Chr14: 47494019-47500526 Glycine max
Glyma.14G209700 2.0kb downstream 2.0kb downstream 2000 false Chr14: 47494019-47496018 Glycine max
Glyma.14G209700 5.0kb upstream 5.0kb upstream 9508 true Chr14: 47496019-47505526 Glycine max
Glyma.14G209700 5.0kb upstream 5.0kb upstream 5000 false Chr14: 47500527-47505526 Glycine max
Glyma.14G209700 5.0kb downstream 5.0kb downstream 9508 true Chr14: 47491019-47500526 Glycine max
Glyma.14G209700 5.0kb downstream 5.0kb downstream 5000 false Chr14: 47491019-47496018 Glycine max
Glyma.14G209700 10.0kb upstream 10.0kb upstream 14508 true Chr14: 47496019-47510526 Glycine max
Glyma.14G209700 10.0kb upstream 10.0kb upstream 10000 false Chr14: 47500527-47510526 Glycine max
Glyma.14G209700 10.0kb downstream 10.0kb downstream 14508 true Chr14: 47486019-47500526 Glycine max
Glyma.14G209700 10.0kb downstream 10.0kb downstream 10000 false Chr14: 47486019-47496018 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041269 5273 Angiosperm View MSA
122301582 5265 Fabidae View MSA
124069921 5270 Rosid View MSA
123743557 5271 Pentapetalae View MSA
122795955 5272 Eudicot View MSA
121345575 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.8122 0.0 29.7037    
cufflinks 28.4414 0.0 76.0336 High High
cufflinks 24.3991 0.0 65.1225 High High
cufflinks 14.318 0.0 38.6154    
cufflinks 8.58566 0.0 24.0614    
cufflinks 5.04589 0.0 15.0934    
cufflinks 6.53856 0.0 18.9223    
cufflinks 17.3857 0.0 46.5627    
cufflinks 2.01935 0.0 6.84085   Low
cufflinks 12.666     High  
cufflinks 0.592       Low
cufflinks 18.312     High  
cufflinks 2.729        
cufflinks 1.78        
cufflinks 0.408       Low
cufflinks 14.042     High  
cufflinks 1.612        
cufflinks 23.3     High High
cufflinks 17.409     High  
cufflinks 12.403     High  
cufflinks 0.478       Low
cufflinks 14.1     High  
cufflinks 13.819     High  
cufflinks 0.466       Low
cufflinks 13.008     High  
cufflinks 1.253        

0 Strain