Gene : Glyma.15G009800 G. max Wm82.a2.v1
Defline:  (1 of 104) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  98
Name:  ? Glyma.15G009800 Secondary Identifier:  ? PAC:30497887
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1081 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G009800 0.5kb upstream 0.5kb upstream 5589 true Chr15: 753771-759359 Glycine max
Glyma.15G009800 0.5kb upstream 0.5kb upstream 500 false Chr15: 758860-759359 Glycine max
Glyma.15G009800 0.5kb downstream 0.5kb downstream 5589 true Chr15: 753271-758859 Glycine max
Glyma.15G009800 0.5kb downstream 0.5kb downstream 500 false Chr15: 753271-753770 Glycine max
Glyma.15G009800 1.0kb upstream 1.0kb upstream 6089 true Chr15: 753771-759859 Glycine max
Glyma.15G009800 1.0kb upstream 1.0kb upstream 1000 false Chr15: 758860-759859 Glycine max
Glyma.15G009800 1.0kb downstream 1.0kb downstream 6089 true Chr15: 752771-758859 Glycine max
Glyma.15G009800 1.0kb downstream 1.0kb downstream 1000 false Chr15: 752771-753770 Glycine max
Glyma.15G009800 2.0kb upstream 2.0kb upstream 7089 true Chr15: 753771-760859 Glycine max
Glyma.15G009800 2.0kb upstream 2.0kb upstream 2000 false Chr15: 758860-760859 Glycine max
Glyma.15G009800 2.0kb downstream 2.0kb downstream 7089 true Chr15: 751771-758859 Glycine max
Glyma.15G009800 2.0kb downstream 2.0kb downstream 2000 false Chr15: 751771-753770 Glycine max
Glyma.15G009800 5.0kb upstream 5.0kb upstream 10089 true Chr15: 753771-763859 Glycine max
Glyma.15G009800 5.0kb upstream 5.0kb upstream 5000 false Chr15: 758860-763859 Glycine max
Glyma.15G009800 5.0kb downstream 5.0kb downstream 10089 true Chr15: 748771-758859 Glycine max
Glyma.15G009800 5.0kb downstream 5.0kb downstream 5000 false Chr15: 748771-753770 Glycine max
Glyma.15G009800 10.0kb upstream 10.0kb upstream 15089 true Chr15: 753771-768859 Glycine max
Glyma.15G009800 10.0kb upstream 10.0kb upstream 10000 false Chr15: 758860-768859 Glycine max
Glyma.15G009800 10.0kb downstream 10.0kb downstream 15089 true Chr15: 743771-758859 Glycine max
Glyma.15G009800 10.0kb downstream 10.0kb downstream 10000 false Chr15: 743771-753770 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306699 5265 Fabidae View MSA
124062237 5270 Rosid View MSA
123747899 5271 Pentapetalae View MSA
122789338 5272 Eudicot View MSA
122047278 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.27523 0.0 18.2994   Low
cufflinks 4.45803 0.0 24.4033    
cufflinks 1.40447 0.0 12.3086   Low
cufflinks 8.68231 0.0 41.7989   High
cufflinks 3.9361 0.0 33.7115    
cufflinks 1.96285 0.0 8.42935    
cufflinks 7.23296 0.0 44.6184   High
cufflinks 6.43018 0.0 34.7164    
cufflinks 3.3104 0.0 27.3917    
cufflinks 0.633       High
cufflinks 0.024     Low Low
cufflinks 0.269        
cufflinks 0.313        
cufflinks 0.422        
cufflinks 0.017     Low Low
cufflinks 0.271        
cufflinks 0.054     Low  
cufflinks 0.728       High
cufflinks 0.596       High
cufflinks 0.225        
cufflinks 0.038     Low Low
cufflinks 0.273        
cufflinks 0.466        
cufflinks 0.014     Low Low
cufflinks 0.258        
cufflinks 0.058     Low  

0 Strain