Gene : Glyma.15G001400 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31288:SF5 - GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MXL8-RELATED Genomic Order:  14
Name:  ? Glyma.15G001400 Secondary Identifier:  ? PAC:30498712
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G001400 0.5kb upstream 0.5kb upstream 3828 true Chr15: 151772-155599 Glycine max
Glyma.15G001400 0.5kb upstream 0.5kb upstream 500 false Chr15: 155100-155599 Glycine max
Glyma.15G001400 0.5kb downstream 0.5kb downstream 3828 true Chr15: 151272-155099 Glycine max
Glyma.15G001400 0.5kb downstream 0.5kb downstream 500 false Chr15: 151272-151771 Glycine max
Glyma.15G001400 1.0kb upstream 1.0kb upstream 4328 true Chr15: 151772-156099 Glycine max
Glyma.15G001400 1.0kb upstream 1.0kb upstream 1000 false Chr15: 155100-156099 Glycine max
Glyma.15G001400 1.0kb downstream 1.0kb downstream 4328 true Chr15: 150772-155099 Glycine max
Glyma.15G001400 1.0kb downstream 1.0kb downstream 1000 false Chr15: 150772-151771 Glycine max
Glyma.15G001400 2.0kb upstream 2.0kb upstream 5328 true Chr15: 151772-157099 Glycine max
Glyma.15G001400 2.0kb upstream 2.0kb upstream 2000 false Chr15: 155100-157099 Glycine max
Glyma.15G001400 2.0kb downstream 2.0kb downstream 5328 true Chr15: 149772-155099 Glycine max
Glyma.15G001400 2.0kb downstream 2.0kb downstream 2000 false Chr15: 149772-151771 Glycine max
Glyma.15G001400 5.0kb upstream 5.0kb upstream 8328 true Chr15: 151772-160099 Glycine max
Glyma.15G001400 5.0kb upstream 5.0kb upstream 5000 false Chr15: 155100-160099 Glycine max
Glyma.15G001400 5.0kb downstream 5.0kb downstream 8328 true Chr15: 146772-155099 Glycine max
Glyma.15G001400 5.0kb downstream 5.0kb downstream 5000 false Chr15: 146772-151771 Glycine max
Glyma.15G001400 10.0kb upstream 10.0kb upstream 13328 true Chr15: 151772-165099 Glycine max
Glyma.15G001400 10.0kb upstream 10.0kb upstream 10000 false Chr15: 155100-165099 Glycine max
Glyma.15G001400 10.0kb downstream 10.0kb downstream 13328 true Chr15: 141772-155099 Glycine max
Glyma.15G001400 10.0kb downstream 10.0kb downstream 10000 false Chr15: 141772-151771 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041437 5273 Angiosperm View MSA
122255270 5265 Fabidae View MSA
124067612 5270 Rosid View MSA
123741790 5271 Pentapetalae View MSA
122786128 5272 Eudicot View MSA
121350497 5274 Embryophyte View MSA
123381757 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.106 0.0 87.1822 High  
cufflinks 117.152 0.0 541.057 High High
cufflinks 28.7669 0.0 102.303 High  
cufflinks 54.1045 0.0 219.91 High  
cufflinks 29.6083 0.0 105.269 High  
cufflinks 29.8642 0.0 106.523 High  
cufflinks 26.62 0.0 93.1795 High  
cufflinks 78.1457 0.0 307.425 High High
cufflinks 41.2305 0.0 155.262 High  
cufflinks 16.835     High  
cufflinks 2.412       Low
cufflinks 7.964     High  
cufflinks 9.918     High  
cufflinks 6.516        
cufflinks 14.056     High  
cufflinks 21.239     High  
cufflinks 5.171        
cufflinks 10.95     High  
cufflinks 44.634     High High
cufflinks 16.413     High  
cufflinks 4.052       Low
cufflinks 17.663     High  
cufflinks 14.828     High  
cufflinks 2.154       Low
cufflinks 18.111     High  
cufflinks 3.682       Low

0 Strain