Gene : Glyma.15G048700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12707 - PINN Genomic Order:  487
Name:  ? Glyma.15G048700 Secondary Identifier:  ? PAC:30499791
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G048700 0.5kb upstream 0.5kb upstream 4399 true Chr15: 3842577-3846975 Glycine max
Glyma.15G048700 0.5kb upstream 0.5kb upstream 500 false Chr15: 3842577-3843076 Glycine max
Glyma.15G048700 0.5kb downstream 0.5kb downstream 4399 true Chr15: 3843077-3847475 Glycine max
Glyma.15G048700 0.5kb downstream 0.5kb downstream 500 false Chr15: 3846976-3847475 Glycine max
Glyma.15G048700 1.0kb upstream 1.0kb upstream 4899 true Chr15: 3842077-3846975 Glycine max
Glyma.15G048700 1.0kb upstream 1.0kb upstream 1000 false Chr15: 3842077-3843076 Glycine max
Glyma.15G048700 1.0kb downstream 1.0kb downstream 4899 true Chr15: 3843077-3847975 Glycine max
Glyma.15G048700 1.0kb downstream 1.0kb downstream 1000 false Chr15: 3846976-3847975 Glycine max
Glyma.15G048700 2.0kb upstream 2.0kb upstream 5899 true Chr15: 3841077-3846975 Glycine max
Glyma.15G048700 2.0kb upstream 2.0kb upstream 2000 false Chr15: 3841077-3843076 Glycine max
Glyma.15G048700 2.0kb downstream 2.0kb downstream 5899 true Chr15: 3843077-3848975 Glycine max
Glyma.15G048700 2.0kb downstream 2.0kb downstream 2000 false Chr15: 3846976-3848975 Glycine max
Glyma.15G048700 5.0kb upstream 5.0kb upstream 8899 true Chr15: 3838077-3846975 Glycine max
Glyma.15G048700 5.0kb upstream 5.0kb upstream 5000 false Chr15: 3838077-3843076 Glycine max
Glyma.15G048700 5.0kb downstream 5.0kb downstream 8899 true Chr15: 3843077-3851975 Glycine max
Glyma.15G048700 5.0kb downstream 5.0kb downstream 5000 false Chr15: 3846976-3851975 Glycine max
Glyma.15G048700 10.0kb upstream 10.0kb upstream 13899 true Chr15: 3833077-3846975 Glycine max
Glyma.15G048700 10.0kb upstream 10.0kb upstream 10000 false Chr15: 3833077-3843076 Glycine max
Glyma.15G048700 10.0kb downstream 10.0kb downstream 13899 true Chr15: 3843077-3856975 Glycine max
Glyma.15G048700 10.0kb downstream 10.0kb downstream 10000 false Chr15: 3846976-3856975 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300845 5265 Fabidae View MSA
124061315 5270 Rosid View MSA
123738009 5271 Pentapetalae View MSA
122786181 5272 Eudicot View MSA
122046264 5273 Angiosperm View MSA
121351481 5274 Embryophyte View MSA
123426416 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.599 0.0 41.6201   High
cufflinks 17.4695 0.0 46.6569   High
cufflinks 12.9211 0.0 34.499    
cufflinks 10.3207 0.0 27.7168    
cufflinks 13.7838 0.0 36.7874    
cufflinks 8.7878 0.0 23.7998   Low
cufflinks 11.4135 0.0 30.5797    
cufflinks 13.6101 0.0 36.3215    
cufflinks 11.7408 0.0 31.424    
cufflinks 7.37       Low
cufflinks 8.144     High Low
cufflinks 9.959     High  
cufflinks 10.839     High  
cufflinks 14.182     High High
cufflinks 10.25     High  
cufflinks 11.487     High  
cufflinks 6.79     High Low
cufflinks 10.609     High  
cufflinks 15.736     High High
cufflinks 11.955     High  
cufflinks 9.699     High  
cufflinks 11.747     High  
cufflinks 13.033     High  
cufflinks 9.217     High  
cufflinks 11.743     High  
cufflinks 9.663     High  

0 Strain