Gene : Glyma.15G052400 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21649//PTHR21649:SF28 - CHLOROPHYLL A/B BINDING PROTEIN Genomic Order:  524
Name:  ? Glyma.15G052400 Secondary Identifier:  ? PAC:30495869
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G052400 0.5kb upstream 0.5kb upstream 2767 true Chr15: 4132356-4135122 Glycine max
Glyma.15G052400 0.5kb upstream 0.5kb upstream 500 false Chr15: 4132356-4132855 Glycine max
Glyma.15G052400 0.5kb downstream 0.5kb downstream 2767 true Chr15: 4132856-4135622 Glycine max
Glyma.15G052400 0.5kb downstream 0.5kb downstream 500 false Chr15: 4135123-4135622 Glycine max
Glyma.15G052400 1.0kb upstream 1.0kb upstream 3267 true Chr15: 4131856-4135122 Glycine max
Glyma.15G052400 1.0kb upstream 1.0kb upstream 1000 false Chr15: 4131856-4132855 Glycine max
Glyma.15G052400 1.0kb downstream 1.0kb downstream 3267 true Chr15: 4132856-4136122 Glycine max
Glyma.15G052400 1.0kb downstream 1.0kb downstream 1000 false Chr15: 4135123-4136122 Glycine max
Glyma.15G052400 2.0kb upstream 2.0kb upstream 4267 true Chr15: 4130856-4135122 Glycine max
Glyma.15G052400 2.0kb upstream 2.0kb upstream 2000 false Chr15: 4130856-4132855 Glycine max
Glyma.15G052400 2.0kb downstream 2.0kb downstream 4267 true Chr15: 4132856-4137122 Glycine max
Glyma.15G052400 2.0kb downstream 2.0kb downstream 2000 false Chr15: 4135123-4137122 Glycine max
Glyma.15G052400 5.0kb upstream 5.0kb upstream 7267 true Chr15: 4127856-4135122 Glycine max
Glyma.15G052400 5.0kb upstream 5.0kb upstream 5000 false Chr15: 4127856-4132855 Glycine max
Glyma.15G052400 5.0kb downstream 5.0kb downstream 7267 true Chr15: 4132856-4140122 Glycine max
Glyma.15G052400 5.0kb downstream 5.0kb downstream 5000 false Chr15: 4135123-4140122 Glycine max
Glyma.15G052400 10.0kb upstream 10.0kb upstream 12267 true Chr15: 4122856-4135122 Glycine max
Glyma.15G052400 10.0kb upstream 10.0kb upstream 10000 false Chr15: 4122856-4132855 Glycine max
Glyma.15G052400 10.0kb downstream 10.0kb downstream 12267 true Chr15: 4132856-4145122 Glycine max
Glyma.15G052400 10.0kb downstream 10.0kb downstream 10000 false Chr15: 4135123-4145122 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311763 5265 Fabidae View MSA
124068665 5270 Rosid View MSA
123745282 5271 Pentapetalae View MSA
122788201 5272 Eudicot View MSA
122042531 5273 Angiosperm View MSA
121350849 5274 Embryophyte View MSA
123381903 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 139.654 0.0 525.546 High High
cufflinks 111.021 0.0 554.622 High High
cufflinks 19.3882 0.0 73.4252    
cufflinks 49.2209 0.0 193.011 High  
cufflinks 5.85558 0.0 25.2099   Low
cufflinks 8.05203 0.0 30.8542    
cufflinks 52.9647 0.0 166.461 High  
cufflinks 51.5822 0.0 156.69 High  
cufflinks 2.86456 0.0 13.4862   Low
cufflinks 37.23     High  
cufflinks 0.062       Low
cufflinks 18.602     High  
cufflinks 0.157        
cufflinks 0.014     Low Low
cufflinks 0.266        
cufflinks 178.226     High High
cufflinks 0.034     Low Low
cufflinks 26.948     High  
cufflinks 43.728     High  
cufflinks 193.844     High High
cufflinks 0.119        
cufflinks 199.839     High High
cufflinks 137.584     High High
cufflinks 0.045     Low Low
cufflinks 200.896     High High
cufflinks 0.039     Low Low

0 Strain