Gene : Glyma.15G053600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR23335:SF12 - CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1-RELATED Genomic Order:  536
Name:  ? Glyma.15G053600 Secondary Identifier:  ? PAC:30499700
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G053600 0.5kb upstream 0.5kb upstream 11753 true Chr15: 4208974-4220726 Glycine max
Glyma.15G053600 0.5kb upstream 0.5kb upstream 500 false Chr15: 4208974-4209473 Glycine max
Glyma.15G053600 0.5kb downstream 0.5kb downstream 11753 true Chr15: 4209474-4221226 Glycine max
Glyma.15G053600 0.5kb downstream 0.5kb downstream 500 false Chr15: 4220727-4221226 Glycine max
Glyma.15G053600 1.0kb upstream 1.0kb upstream 12253 true Chr15: 4208474-4220726 Glycine max
Glyma.15G053600 1.0kb upstream 1.0kb upstream 1000 false Chr15: 4208474-4209473 Glycine max
Glyma.15G053600 1.0kb downstream 1.0kb downstream 12253 true Chr15: 4209474-4221726 Glycine max
Glyma.15G053600 1.0kb downstream 1.0kb downstream 1000 false Chr15: 4220727-4221726 Glycine max
Glyma.15G053600 2.0kb upstream 2.0kb upstream 13253 true Chr15: 4207474-4220726 Glycine max
Glyma.15G053600 2.0kb upstream 2.0kb upstream 2000 false Chr15: 4207474-4209473 Glycine max
Glyma.15G053600 2.0kb downstream 2.0kb downstream 13253 true Chr15: 4209474-4222726 Glycine max
Glyma.15G053600 2.0kb downstream 2.0kb downstream 2000 false Chr15: 4220727-4222726 Glycine max
Glyma.15G053600 5.0kb upstream 5.0kb upstream 16253 true Chr15: 4204474-4220726 Glycine max
Glyma.15G053600 5.0kb upstream 5.0kb upstream 5000 false Chr15: 4204474-4209473 Glycine max
Glyma.15G053600 5.0kb downstream 5.0kb downstream 16253 true Chr15: 4209474-4225726 Glycine max
Glyma.15G053600 5.0kb downstream 5.0kb downstream 5000 false Chr15: 4220727-4225726 Glycine max
Glyma.15G053600 10.0kb upstream 10.0kb upstream 21253 true Chr15: 4199474-4220726 Glycine max
Glyma.15G053600 10.0kb upstream 10.0kb upstream 10000 false Chr15: 4199474-4209473 Glycine max
Glyma.15G053600 10.0kb downstream 10.0kb downstream 21253 true Chr15: 4209474-4230726 Glycine max
Glyma.15G053600 10.0kb downstream 10.0kb downstream 10000 false Chr15: 4220727-4230726 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310987 5265 Fabidae View MSA
124071259 5270 Rosid View MSA
123742819 5271 Pentapetalae View MSA
122795418 5272 Eudicot View MSA
122048924 5273 Angiosperm View MSA
121350175 5274 Embryophyte View MSA
123427695 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.16898 0.0 21.7939    
cufflinks 6.93565 0.0 18.5259    
cufflinks 9.58018 0.0 25.618   High
cufflinks 7.25476 0.0 19.364    
cufflinks 5.38951 0.0 14.5061   Low
cufflinks 8.39625 0.0 22.402    
cufflinks 8.50434 0.0 22.6897    
cufflinks 6.11092 0.0 16.3656    
cufflinks 6.22158 0.0 16.6561    
cufflinks 2.029       Low
cufflinks 4.237        
cufflinks 3.594        
cufflinks 2.343       Low
cufflinks 2.105       Low
cufflinks 3.393        
cufflinks 4.08        
cufflinks 1.797       Low
cufflinks 3.796        
cufflinks 3.348        
cufflinks 3.948        
cufflinks 4.017        
cufflinks 4.179        
cufflinks 3.043        
cufflinks 4.325       High
cufflinks 3.886        
cufflinks 2.971        

0 Strain