Gene : Glyma.15G088100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33199:SF3 - MACPF DOMAIN-CONTAINING PROTEIN CAD1 Genomic Order:  881
Name:  ? Glyma.15G088100 Secondary Identifier:  ? PAC:30496500
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G088100 0.5kb upstream 0.5kb upstream 7715 true Chr15: 6763821-6771535 Glycine max
Glyma.15G088100 0.5kb upstream 0.5kb upstream 500 false Chr15: 6763821-6764320 Glycine max
Glyma.15G088100 0.5kb downstream 0.5kb downstream 7715 true Chr15: 6764321-6772035 Glycine max
Glyma.15G088100 0.5kb downstream 0.5kb downstream 500 false Chr15: 6771536-6772035 Glycine max
Glyma.15G088100 1.0kb upstream 1.0kb upstream 8215 true Chr15: 6763321-6771535 Glycine max
Glyma.15G088100 1.0kb upstream 1.0kb upstream 1000 false Chr15: 6763321-6764320 Glycine max
Glyma.15G088100 1.0kb downstream 1.0kb downstream 8215 true Chr15: 6764321-6772535 Glycine max
Glyma.15G088100 1.0kb downstream 1.0kb downstream 1000 false Chr15: 6771536-6772535 Glycine max
Glyma.15G088100 2.0kb upstream 2.0kb upstream 9215 true Chr15: 6762321-6771535 Glycine max
Glyma.15G088100 2.0kb upstream 2.0kb upstream 2000 false Chr15: 6762321-6764320 Glycine max
Glyma.15G088100 2.0kb downstream 2.0kb downstream 9215 true Chr15: 6764321-6773535 Glycine max
Glyma.15G088100 2.0kb downstream 2.0kb downstream 2000 false Chr15: 6771536-6773535 Glycine max
Glyma.15G088100 5.0kb upstream 5.0kb upstream 12215 true Chr15: 6759321-6771535 Glycine max
Glyma.15G088100 5.0kb upstream 5.0kb upstream 5000 false Chr15: 6759321-6764320 Glycine max
Glyma.15G088100 5.0kb downstream 5.0kb downstream 12215 true Chr15: 6764321-6776535 Glycine max
Glyma.15G088100 5.0kb downstream 5.0kb downstream 5000 false Chr15: 6771536-6776535 Glycine max
Glyma.15G088100 10.0kb upstream 10.0kb upstream 17215 true Chr15: 6754321-6771535 Glycine max
Glyma.15G088100 10.0kb upstream 10.0kb upstream 10000 false Chr15: 6754321-6764320 Glycine max
Glyma.15G088100 10.0kb downstream 10.0kb downstream 17215 true Chr15: 6764321-6781535 Glycine max
Glyma.15G088100 10.0kb downstream 10.0kb downstream 10000 false Chr15: 6771536-6781535 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306269 5265 Fabidae View MSA
124063432 5270 Rosid View MSA
123741533 5271 Pentapetalae View MSA
122797212 5272 Eudicot View MSA
122044022 5273 Angiosperm View MSA
121349025 5274 Embryophyte View MSA
123381129 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.7926 0.0 8.61895    
cufflinks 3.06233 0.0 9.21281    
cufflinks 5.72134 0.0 22.23    
cufflinks 2.16184 0.0 7.19225   Low
cufflinks 5.07546 0.0 17.1339    
cufflinks 9.35575 0.0 35.701   High
cufflinks 1.53306 0.0 5.6138   Low
cufflinks 4.55229 0.0 15.693    
cufflinks 4.79363 0.0 16.301    
cufflinks 1.589       High
cufflinks 0.561        
cufflinks 0.737        
cufflinks 1.185       High
cufflinks 0.685        
cufflinks 0.511        
cufflinks 0.408        
cufflinks 2.744       High
cufflinks 0.502        
cufflinks 0.501        
cufflinks 0.367        
cufflinks 0.352       Low
cufflinks 0.344       Low
cufflinks 0.987        
cufflinks 0.52        
cufflinks 0.374        
cufflinks 0.984        

0 Strain