Gene : Glyma.15G080200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR32039:SF9 - MAGNESIUM-CHELATASE SUBUNIT CHLI-2, CHLOROPLASTIC Genomic Order:  802
Name:  ? Glyma.15G080200 Secondary Identifier:  ? PAC:30499193
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CHLOROPHYLL-SYN Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G080200 0.5kb upstream 0.5kb upstream 3025 true Chr15: 6155823-6158847 Glycine max
Glyma.15G080200 0.5kb upstream 0.5kb upstream 500 false Chr15: 6158348-6158847 Glycine max
Glyma.15G080200 0.5kb downstream 0.5kb downstream 3025 true Chr15: 6155323-6158347 Glycine max
Glyma.15G080200 0.5kb downstream 0.5kb downstream 500 false Chr15: 6155323-6155822 Glycine max
Glyma.15G080200 1.0kb upstream 1.0kb upstream 3525 true Chr15: 6155823-6159347 Glycine max
Glyma.15G080200 1.0kb upstream 1.0kb upstream 1000 false Chr15: 6158348-6159347 Glycine max
Glyma.15G080200 1.0kb downstream 1.0kb downstream 3525 true Chr15: 6154823-6158347 Glycine max
Glyma.15G080200 1.0kb downstream 1.0kb downstream 1000 false Chr15: 6154823-6155822 Glycine max
Glyma.15G080200 2.0kb upstream 2.0kb upstream 4525 true Chr15: 6155823-6160347 Glycine max
Glyma.15G080200 2.0kb upstream 2.0kb upstream 2000 false Chr15: 6158348-6160347 Glycine max
Glyma.15G080200 2.0kb downstream 2.0kb downstream 4525 true Chr15: 6153823-6158347 Glycine max
Glyma.15G080200 2.0kb downstream 2.0kb downstream 2000 false Chr15: 6153823-6155822 Glycine max
Glyma.15G080200 5.0kb upstream 5.0kb upstream 7525 true Chr15: 6155823-6163347 Glycine max
Glyma.15G080200 5.0kb upstream 5.0kb upstream 5000 false Chr15: 6158348-6163347 Glycine max
Glyma.15G080200 5.0kb downstream 5.0kb downstream 7525 true Chr15: 6150823-6158347 Glycine max
Glyma.15G080200 5.0kb downstream 5.0kb downstream 5000 false Chr15: 6150823-6155822 Glycine max
Glyma.15G080200 10.0kb upstream 10.0kb upstream 12525 true Chr15: 6155823-6168347 Glycine max
Glyma.15G080200 10.0kb upstream 10.0kb upstream 10000 false Chr15: 6158348-6168347 Glycine max
Glyma.15G080200 10.0kb downstream 10.0kb downstream 12525 true Chr15: 6145823-6158347 Glycine max
Glyma.15G080200 10.0kb downstream 10.0kb downstream 10000 false Chr15: 6145823-6155822 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026298 5273 Angiosperm View MSA
122313972 5265 Fabidae View MSA
124063666 5270 Rosid View MSA
123736903 5271 Pentapetalae View MSA
122790961 5272 Eudicot View MSA
121346302 5274 Embryophyte View MSA
123426232 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.538 0.0 77.1124 High High
cufflinks 32.6428 0.0 88.9897 High High
cufflinks 5.20232 0.0 14.8437    
cufflinks 13.2212 0.0 35.3952    
cufflinks 4.45738 0.0 13.0613    
cufflinks 4.89914 0.0 14.1652    
cufflinks 23.7504 0.0 63.6607 High  
cufflinks 8.01941 0.0 22.0157    
cufflinks 2.42254 0.0 7.71212   Low
cufflinks 21.464     High  
cufflinks 0.775        
cufflinks 10.346     High  
cufflinks 0.774        
cufflinks 0.73        
cufflinks 1.628        
cufflinks 96.506     High High
cufflinks 0.239       Low
cufflinks 12.416     High  
cufflinks 26.774     High  
cufflinks 108.19     High High
cufflinks 0.592       Low
cufflinks 98.759     High High
cufflinks 89.091     High High
cufflinks 0.591       Low
cufflinks 104.118     High High
cufflinks 0.633        

0 Strain