Gene : Glyma.15G120500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31573:SF1 - ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ALKB HOMOLOG 2 Genomic Order:  1205
Name:  ? Glyma.15G120500 Secondary Identifier:  ? PAC:30495986
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G120500 0.5kb upstream 0.5kb upstream 2386 true Chr15: 9536356-9538741 Glycine max
Glyma.15G120500 0.5kb upstream 0.5kb upstream 500 false Chr15: 9536356-9536855 Glycine max
Glyma.15G120500 0.5kb downstream 0.5kb downstream 2386 true Chr15: 9536856-9539241 Glycine max
Glyma.15G120500 0.5kb downstream 0.5kb downstream 500 false Chr15: 9538742-9539241 Glycine max
Glyma.15G120500 1.0kb upstream 1.0kb upstream 2886 true Chr15: 9535856-9538741 Glycine max
Glyma.15G120500 1.0kb upstream 1.0kb upstream 1000 false Chr15: 9535856-9536855 Glycine max
Glyma.15G120500 1.0kb downstream 1.0kb downstream 2886 true Chr15: 9536856-9539741 Glycine max
Glyma.15G120500 1.0kb downstream 1.0kb downstream 1000 false Chr15: 9538742-9539741 Glycine max
Glyma.15G120500 2.0kb upstream 2.0kb upstream 3886 true Chr15: 9534856-9538741 Glycine max
Glyma.15G120500 2.0kb upstream 2.0kb upstream 2000 false Chr15: 9534856-9536855 Glycine max
Glyma.15G120500 2.0kb downstream 2.0kb downstream 3886 true Chr15: 9536856-9540741 Glycine max
Glyma.15G120500 2.0kb downstream 2.0kb downstream 2000 false Chr15: 9538742-9540741 Glycine max
Glyma.15G120500 5.0kb upstream 5.0kb upstream 6886 true Chr15: 9531856-9538741 Glycine max
Glyma.15G120500 5.0kb upstream 5.0kb upstream 5000 false Chr15: 9531856-9536855 Glycine max
Glyma.15G120500 5.0kb downstream 5.0kb downstream 6886 true Chr15: 9536856-9543741 Glycine max
Glyma.15G120500 5.0kb downstream 5.0kb downstream 5000 false Chr15: 9538742-9543741 Glycine max
Glyma.15G120500 10.0kb upstream 10.0kb upstream 11886 true Chr15: 9526856-9538741 Glycine max
Glyma.15G120500 10.0kb upstream 10.0kb upstream 10000 false Chr15: 9526856-9536855 Glycine max
Glyma.15G120500 10.0kb downstream 10.0kb downstream 11886 true Chr15: 9536856-9548741 Glycine max
Glyma.15G120500 10.0kb downstream 10.0kb downstream 10000 false Chr15: 9538742-9548741 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306751 5265 Fabidae View MSA
124050829 5270 Rosid View MSA
123749996 5271 Pentapetalae View MSA
122791674 5272 Eudicot View MSA
122048951 5273 Angiosperm View MSA
121351428 5274 Embryophyte View MSA
123423770 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0521923 0.0 0.236041 Low Low
cufflinks 0.249735 0.0 1.00836   High
cufflinks 0.188698 0.0 0.770693 Low  
cufflinks 0.193505 0.0 0.790242    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0961409 0.0 0.412014 Low  
cufflinks 0.0460963 0.0 0.21113 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.101579 0.0 0.432916 Low  
cufflinks 0.024     Low Low
cufflinks 0.048     Low  
cufflinks 0.409       High
cufflinks 0.025     Low Low
cufflinks 0.061     Low  
cufflinks 0.102        
cufflinks 0.125        
cufflinks 0.054     Low  
cufflinks 0.512       High
cufflinks 0.227        
cufflinks 0.17        
cufflinks 0.201        
cufflinks 0.19        
cufflinks 0.077     Low  
cufflinks 0.112        
cufflinks 0.165        
cufflinks 0.124        

0 Strain