Gene : Glyma.15G172100 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR20856:SF7 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 Genomic Order:  1721
Name:  ? Glyma.15G172100 Secondary Identifier:  ? PAC:30498681
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G172100 0.5kb upstream 0.5kb upstream 8674 true Chr15: 15693700-15702373 Glycine max
Glyma.15G172100 0.5kb upstream 0.5kb upstream 500 false Chr15: 15701874-15702373 Glycine max
Glyma.15G172100 0.5kb downstream 0.5kb downstream 8674 true Chr15: 15693200-15701873 Glycine max
Glyma.15G172100 0.5kb downstream 0.5kb downstream 500 false Chr15: 15693200-15693699 Glycine max
Glyma.15G172100 1.0kb upstream 1.0kb upstream 9174 true Chr15: 15693700-15702873 Glycine max
Glyma.15G172100 1.0kb upstream 1.0kb upstream 1000 false Chr15: 15701874-15702873 Glycine max
Glyma.15G172100 1.0kb downstream 1.0kb downstream 9174 true Chr15: 15692700-15701873 Glycine max
Glyma.15G172100 1.0kb downstream 1.0kb downstream 1000 false Chr15: 15692700-15693699 Glycine max
Glyma.15G172100 2.0kb upstream 2.0kb upstream 10174 true Chr15: 15693700-15703873 Glycine max
Glyma.15G172100 2.0kb upstream 2.0kb upstream 2000 false Chr15: 15701874-15703873 Glycine max
Glyma.15G172100 2.0kb downstream 2.0kb downstream 10174 true Chr15: 15691700-15701873 Glycine max
Glyma.15G172100 2.0kb downstream 2.0kb downstream 2000 false Chr15: 15691700-15693699 Glycine max
Glyma.15G172100 5.0kb upstream 5.0kb upstream 13174 true Chr15: 15693700-15706873 Glycine max
Glyma.15G172100 5.0kb upstream 5.0kb upstream 5000 false Chr15: 15701874-15706873 Glycine max
Glyma.15G172100 5.0kb downstream 5.0kb downstream 13174 true Chr15: 15688700-15701873 Glycine max
Glyma.15G172100 5.0kb downstream 5.0kb downstream 5000 false Chr15: 15688700-15693699 Glycine max
Glyma.15G172100 10.0kb upstream 10.0kb upstream 18174 true Chr15: 15693700-15711873 Glycine max
Glyma.15G172100 10.0kb upstream 10.0kb upstream 10000 false Chr15: 15701874-15711873 Glycine max
Glyma.15G172100 10.0kb downstream 10.0kb downstream 18174 true Chr15: 15683700-15701873 Glycine max
Glyma.15G172100 10.0kb downstream 10.0kb downstream 10000 false Chr15: 15683700-15693699 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300120 5265 Fabidae View MSA
124061336 5270 Rosid View MSA
123743621 5271 Pentapetalae View MSA
122789803 5272 Eudicot View MSA
122041564 5273 Angiosperm View MSA
121347423 5274 Embryophyte View MSA
123428402 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.8991 0.0 79.4826 High High
cufflinks 19.4813 0.0 55.1108    
cufflinks 28.3565 0.0 84.7291 High High
cufflinks 21.6628 0.0 62.1669 High  
cufflinks 20.8816 0.0 59.6446 High  
cufflinks 15.4302 0.0 42.6634   Low
cufflinks 19.2499 0.0 54.4298    
cufflinks 21.6559 0.0 62.1463 High  
cufflinks 17.5903 0.0 49.2402    
cufflinks 10.725     High  
cufflinks 5.937     High Low
cufflinks 16.608     High High
cufflinks 15.332     High High
cufflinks 14.228     High  
cufflinks 5.909     High Low
cufflinks 11.898     High  
cufflinks 9.476     High  
cufflinks 14.57     High  
cufflinks 16.191     High High
cufflinks 11.619     High  
cufflinks 5.403       Low
cufflinks 12.702     High  
cufflinks 12.531     High  
cufflinks 7.356     High  
cufflinks 10.876     High  
cufflinks 8.744     High  

0 Strain