Gene : Glyma.15G172800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10052//PTHR10052:SF11 - 60S RIBOSOMAL PROTEIN L18A Genomic Order:  1728
Name:  ? Glyma.15G172800 Secondary Identifier:  ? PAC:30498732
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G172800 0.5kb upstream 0.5kb upstream 3901 true Chr15: 15819541-15823441 Glycine max
Glyma.15G172800 0.5kb upstream 0.5kb upstream 500 false Chr15: 15819541-15820040 Glycine max
Glyma.15G172800 0.5kb downstream 0.5kb downstream 3901 true Chr15: 15820041-15823941 Glycine max
Glyma.15G172800 0.5kb downstream 0.5kb downstream 500 false Chr15: 15823442-15823941 Glycine max
Glyma.15G172800 1.0kb upstream 1.0kb upstream 4401 true Chr15: 15819041-15823441 Glycine max
Glyma.15G172800 1.0kb upstream 1.0kb upstream 1000 false Chr15: 15819041-15820040 Glycine max
Glyma.15G172800 1.0kb downstream 1.0kb downstream 4401 true Chr15: 15820041-15824441 Glycine max
Glyma.15G172800 1.0kb downstream 1.0kb downstream 1000 false Chr15: 15823442-15824441 Glycine max
Glyma.15G172800 2.0kb upstream 2.0kb upstream 5401 true Chr15: 15818041-15823441 Glycine max
Glyma.15G172800 2.0kb upstream 2.0kb upstream 2000 false Chr15: 15818041-15820040 Glycine max
Glyma.15G172800 2.0kb downstream 2.0kb downstream 5401 true Chr15: 15820041-15825441 Glycine max
Glyma.15G172800 2.0kb downstream 2.0kb downstream 2000 false Chr15: 15823442-15825441 Glycine max
Glyma.15G172800 5.0kb upstream 5.0kb upstream 8401 true Chr15: 15815041-15823441 Glycine max
Glyma.15G172800 5.0kb upstream 5.0kb upstream 5000 false Chr15: 15815041-15820040 Glycine max
Glyma.15G172800 5.0kb downstream 5.0kb downstream 8401 true Chr15: 15820041-15828441 Glycine max
Glyma.15G172800 5.0kb downstream 5.0kb downstream 5000 false Chr15: 15823442-15828441 Glycine max
Glyma.15G172800 10.0kb upstream 10.0kb upstream 13401 true Chr15: 15810041-15823441 Glycine max
Glyma.15G172800 10.0kb upstream 10.0kb upstream 10000 false Chr15: 15810041-15820040 Glycine max
Glyma.15G172800 10.0kb downstream 10.0kb downstream 13401 true Chr15: 15820041-15833441 Glycine max
Glyma.15G172800 10.0kb downstream 10.0kb downstream 10000 false Chr15: 15823442-15833441 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027441 5273 Angiosperm View MSA
122311030 5265 Fabidae View MSA
124066289 5270 Rosid View MSA
123745455 5271 Pentapetalae View MSA
122796236 5272 Eudicot View MSA
121350597 5274 Embryophyte View MSA
123425775 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.34191 0.0 17.7007   High
cufflinks 0.0695941 0.0 0.30959 Low Low
cufflinks 0.117679 0.0 0.485512 Low  
cufflinks 0.331482 0.0 2.56788    
cufflinks 0.470251 0.0 3.37739    
cufflinks 5.92892 0.0 26.4545   High
cufflinks 0.150306 0.0 0.605855 Low  
cufflinks 0.106415 0.0 0.441795 Low  
cufflinks 1.62556 0.0 9.71457    
cufflinks 0.008     Low Low
cufflinks 0.471       High
cufflinks 0.015     Low  
cufflinks 0.087     Low  
cufflinks 0.022     Low  
cufflinks 0.076        
cufflinks 0.034     Low  
cufflinks 0.026     Low  
cufflinks 0.011     Low Low
cufflinks 0.021     Low  
cufflinks 0.025     Low  
cufflinks 0.406       High
cufflinks 0.062     Low  
cufflinks 0.066     Low  
cufflinks 1.736       High
cufflinks 0.023     Low  
cufflinks 0.27       High

0 Strain