Gene : Glyma.15G192300 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG2115 - Vacuolar sorting protein VPS45 Genomic Order:  1923
Name:  ? Glyma.15G192300 Secondary Identifier:  ? PAC:30495651
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G192300 0.5kb upstream 0.5kb upstream 30970 true Chr15: 20900812-20931781 Glycine max
Glyma.15G192300 0.5kb upstream 0.5kb upstream 500 false Chr15: 20931282-20931781 Glycine max
Glyma.15G192300 0.5kb downstream 0.5kb downstream 30970 true Chr15: 20900312-20931281 Glycine max
Glyma.15G192300 0.5kb downstream 0.5kb downstream 500 false Chr15: 20900312-20900811 Glycine max
Glyma.15G192300 1.0kb upstream 1.0kb upstream 31470 true Chr15: 20900812-20932281 Glycine max
Glyma.15G192300 1.0kb upstream 1.0kb upstream 1000 false Chr15: 20931282-20932281 Glycine max
Glyma.15G192300 1.0kb downstream 1.0kb downstream 31470 true Chr15: 20899812-20931281 Glycine max
Glyma.15G192300 1.0kb downstream 1.0kb downstream 1000 false Chr15: 20899812-20900811 Glycine max
Glyma.15G192300 2.0kb upstream 2.0kb upstream 32470 true Chr15: 20900812-20933281 Glycine max
Glyma.15G192300 2.0kb upstream 2.0kb upstream 2000 false Chr15: 20931282-20933281 Glycine max
Glyma.15G192300 2.0kb downstream 2.0kb downstream 32470 true Chr15: 20898812-20931281 Glycine max
Glyma.15G192300 2.0kb downstream 2.0kb downstream 2000 false Chr15: 20898812-20900811 Glycine max
Glyma.15G192300 5.0kb upstream 5.0kb upstream 35470 true Chr15: 20900812-20936281 Glycine max
Glyma.15G192300 5.0kb upstream 5.0kb upstream 5000 false Chr15: 20931282-20936281 Glycine max
Glyma.15G192300 5.0kb downstream 5.0kb downstream 35470 true Chr15: 20895812-20931281 Glycine max
Glyma.15G192300 5.0kb downstream 5.0kb downstream 5000 false Chr15: 20895812-20900811 Glycine max
Glyma.15G192300 10.0kb upstream 10.0kb upstream 40470 true Chr15: 20900812-20941281 Glycine max
Glyma.15G192300 10.0kb upstream 10.0kb upstream 10000 false Chr15: 20931282-20941281 Glycine max
Glyma.15G192300 10.0kb downstream 10.0kb downstream 40470 true Chr15: 20890812-20931281 Glycine max
Glyma.15G192300 10.0kb downstream 10.0kb downstream 10000 false Chr15: 20890812-20900811 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303827 5265 Fabidae View MSA
124068245 5270 Rosid View MSA
123740237 5271 Pentapetalae View MSA
122788545 5272 Eudicot View MSA
122042289 5273 Angiosperm View MSA
121346645 5274 Embryophyte View MSA
123425367 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.60518 0.0 17.653    
cufflinks 5.26415 0.0 14.1712    
cufflinks 6.82184 0.0 18.2239    
cufflinks 8.22995 0.0 21.9573    
cufflinks 9.43239 0.0 25.2083   High
cufflinks 5.13529 0.0 13.8275    
cufflinks 4.60688 0.0 12.4796   Low
cufflinks 8.58533 0.0 22.9111   High
cufflinks 5.17201 0.0 13.9258    
cufflinks 1.31       High
cufflinks 0.597       Low
cufflinks 0.794        
cufflinks 1.334       High
cufflinks 1.595       High
cufflinks 0.622       Low
cufflinks 1.037        
cufflinks 0.692       Low
cufflinks 1.068        
cufflinks 1.106        
cufflinks 0.912        
cufflinks 0.857        
cufflinks 1.027        
cufflinks 0.913        
cufflinks 0.725        
cufflinks 0.867        
cufflinks 0.731        

0 Strain