Gene : Glyma.15G238900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR13479 - 30S RIBOSOMAL PROTEIN S18 Genomic Order:  2389
Name:  ? Glyma.15G238900 Secondary Identifier:  ? PAC:30497831
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G238900 0.5kb upstream 0.5kb upstream 1612 true Chr15: 44972418-44974029 Glycine max
Glyma.15G238900 0.5kb upstream 0.5kb upstream 500 false Chr15: 44972418-44972917 Glycine max
Glyma.15G238900 0.5kb downstream 0.5kb downstream 1612 true Chr15: 44972918-44974529 Glycine max
Glyma.15G238900 0.5kb downstream 0.5kb downstream 500 false Chr15: 44974030-44974529 Glycine max
Glyma.15G238900 1.0kb upstream 1.0kb upstream 2112 true Chr15: 44971918-44974029 Glycine max
Glyma.15G238900 1.0kb upstream 1.0kb upstream 1000 false Chr15: 44971918-44972917 Glycine max
Glyma.15G238900 1.0kb downstream 1.0kb downstream 2112 true Chr15: 44972918-44975029 Glycine max
Glyma.15G238900 1.0kb downstream 1.0kb downstream 1000 false Chr15: 44974030-44975029 Glycine max
Glyma.15G238900 2.0kb upstream 2.0kb upstream 3112 true Chr15: 44970918-44974029 Glycine max
Glyma.15G238900 2.0kb upstream 2.0kb upstream 2000 false Chr15: 44970918-44972917 Glycine max
Glyma.15G238900 2.0kb downstream 2.0kb downstream 3112 true Chr15: 44972918-44976029 Glycine max
Glyma.15G238900 2.0kb downstream 2.0kb downstream 2000 false Chr15: 44974030-44976029 Glycine max
Glyma.15G238900 5.0kb upstream 5.0kb upstream 6112 true Chr15: 44967918-44974029 Glycine max
Glyma.15G238900 5.0kb upstream 5.0kb upstream 5000 false Chr15: 44967918-44972917 Glycine max
Glyma.15G238900 5.0kb downstream 5.0kb downstream 6112 true Chr15: 44972918-44979029 Glycine max
Glyma.15G238900 5.0kb downstream 5.0kb downstream 5000 false Chr15: 44974030-44979029 Glycine max
Glyma.15G238900 10.0kb upstream 10.0kb upstream 11112 true Chr15: 44962918-44974029 Glycine max
Glyma.15G238900 10.0kb upstream 10.0kb upstream 10000 false Chr15: 44962918-44972917 Glycine max
Glyma.15G238900 10.0kb downstream 10.0kb downstream 11112 true Chr15: 44972918-44984029 Glycine max
Glyma.15G238900 10.0kb downstream 10.0kb downstream 10000 false Chr15: 44974030-44984029 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028985 5273 Angiosperm View MSA
122254668 5265 Fabidae View MSA
124037325 5270 Rosid View MSA
123748932 5271 Pentapetalae View MSA
122795855 5272 Eudicot View MSA
121351614 5274 Embryophyte View MSA
123382248 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.565623 0.0 2.82256    
cufflinks 0.294217 0.0 1.16156    
cufflinks 0.0397998 0.0 0.181607 Low Low
cufflinks 5.15363 0.0 19.0563   High
cufflinks 0.260996 0.0 1.03734    
cufflinks 0.309996 0.0 1.22133    
cufflinks 2.96176 0.0 12.8859   High
cufflinks 0.202685 0.0 0.814096 Low  
cufflinks 0.135377 0.0 0.553871 Low  
cufflinks 0.2        
cufflinks 0.085        
cufflinks 0.269        
cufflinks 0.131        
cufflinks 0.147        
cufflinks 0.168        
cufflinks 0.444        
cufflinks 0.128        
cufflinks 0.252        
cufflinks 0.253        
cufflinks 0.871       High
cufflinks 0.057     Low Low
cufflinks 0.922       High
cufflinks 0.692       High
cufflinks 0.053     Low Low
cufflinks 1.222       High
cufflinks 0.047     Low Low

0 Strain