Gene : Glyma.15G227300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR10252//PTHR10252:SF40 - HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED Genomic Order:  2273
Name:  ? Glyma.15G227300 Secondary Identifier:  ? PAC:30497498
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.15G227300 0.5kb upstream 0.5kb upstream 8417 true Chr15: 41988090-41996506 Glycine max
Glyma.15G227300 0.5kb upstream 0.5kb upstream 500 false Chr15: 41988090-41988589 Glycine max
Glyma.15G227300 0.5kb downstream 0.5kb downstream 8417 true Chr15: 41988590-41997006 Glycine max
Glyma.15G227300 0.5kb downstream 0.5kb downstream 500 false Chr15: 41996507-41997006 Glycine max
Glyma.15G227300 1.0kb upstream 1.0kb upstream 8917 true Chr15: 41987590-41996506 Glycine max
Glyma.15G227300 1.0kb upstream 1.0kb upstream 1000 false Chr15: 41987590-41988589 Glycine max
Glyma.15G227300 1.0kb downstream 1.0kb downstream 8917 true Chr15: 41988590-41997506 Glycine max
Glyma.15G227300 1.0kb downstream 1.0kb downstream 1000 false Chr15: 41996507-41997506 Glycine max
Glyma.15G227300 2.0kb upstream 2.0kb upstream 9917 true Chr15: 41986590-41996506 Glycine max
Glyma.15G227300 2.0kb upstream 2.0kb upstream 2000 false Chr15: 41986590-41988589 Glycine max
Glyma.15G227300 2.0kb downstream 2.0kb downstream 9917 true Chr15: 41988590-41998506 Glycine max
Glyma.15G227300 2.0kb downstream 2.0kb downstream 2000 false Chr15: 41996507-41998506 Glycine max
Glyma.15G227300 5.0kb upstream 5.0kb upstream 12917 true Chr15: 41983590-41996506 Glycine max
Glyma.15G227300 5.0kb upstream 5.0kb upstream 5000 false Chr15: 41983590-41988589 Glycine max
Glyma.15G227300 5.0kb downstream 5.0kb downstream 12917 true Chr15: 41988590-42001506 Glycine max
Glyma.15G227300 5.0kb downstream 5.0kb downstream 5000 false Chr15: 41996507-42001506 Glycine max
Glyma.15G227300 10.0kb upstream 10.0kb upstream 17917 true Chr15: 41978590-41996506 Glycine max
Glyma.15G227300 10.0kb upstream 10.0kb upstream 10000 false Chr15: 41978590-41988589 Glycine max
Glyma.15G227300 10.0kb downstream 10.0kb downstream 17917 true Chr15: 41988590-42006506 Glycine max
Glyma.15G227300 10.0kb downstream 10.0kb downstream 10000 false Chr15: 41996507-42006506 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309450 5265 Fabidae View MSA
124069286 5270 Rosid View MSA
123742462 5271 Pentapetalae View MSA
122792661 5272 Eudicot View MSA
122049084 5273 Angiosperm View MSA
123429029 5275 Viridiplantae View MSA
121345521 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.864 0.0 68.6542   High
cufflinks 18.4072 0.0 54.708   High
cufflinks 15.8145 0.0 47.4303    
cufflinks 14.6766 0.0 56.9585    
cufflinks 14.6427 0.0 55.0572    
cufflinks 16.306 0.0 64.9532    
cufflinks 18.6184 0.0 55.4573   High
cufflinks 13.4098 0.0 40.6534   Low
cufflinks 14.199 0.0 54.5413    
cufflinks 1.675       Low
cufflinks 3.029       High
cufflinks 2.313        
cufflinks 1.931       Low
cufflinks 1.792       Low
cufflinks 2.86        
cufflinks 2.681        
cufflinks 2.27        
cufflinks 2.289        
cufflinks 2.792        
cufflinks 2.55        
cufflinks 2.613        
cufflinks 2.959       High
cufflinks 2.582        
cufflinks 3.179       High
cufflinks 2.462        
cufflinks 2.554        

0 Strain