Gene : Glyma.16G020400 G. max Wm82.a2.v1
Defline:  (1 of 4) KOG3227 - Calcium-responsive transcription coactivator Genomic Order:  204
Name:  ? Glyma.16G020400 Secondary Identifier:  ? PAC:30560956
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G020400 0.5kb upstream 0.5kb upstream 4496 true Chr16: 1853542-1858037 Glycine max
Glyma.16G020400 0.5kb upstream 0.5kb upstream 500 false Chr16: 1853542-1854041 Glycine max
Glyma.16G020400 0.5kb downstream 0.5kb downstream 4496 true Chr16: 1854042-1858537 Glycine max
Glyma.16G020400 0.5kb downstream 0.5kb downstream 500 false Chr16: 1858038-1858537 Glycine max
Glyma.16G020400 1.0kb upstream 1.0kb upstream 4996 true Chr16: 1853042-1858037 Glycine max
Glyma.16G020400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 1853042-1854041 Glycine max
Glyma.16G020400 1.0kb downstream 1.0kb downstream 4996 true Chr16: 1854042-1859037 Glycine max
Glyma.16G020400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 1858038-1859037 Glycine max
Glyma.16G020400 2.0kb upstream 2.0kb upstream 5996 true Chr16: 1852042-1858037 Glycine max
Glyma.16G020400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 1852042-1854041 Glycine max
Glyma.16G020400 2.0kb downstream 2.0kb downstream 5996 true Chr16: 1854042-1860037 Glycine max
Glyma.16G020400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 1858038-1860037 Glycine max
Glyma.16G020400 5.0kb upstream 5.0kb upstream 8996 true Chr16: 1849042-1858037 Glycine max
Glyma.16G020400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 1849042-1854041 Glycine max
Glyma.16G020400 5.0kb downstream 5.0kb downstream 8996 true Chr16: 1854042-1863037 Glycine max
Glyma.16G020400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 1858038-1863037 Glycine max
Glyma.16G020400 10.0kb upstream 10.0kb upstream 13996 true Chr16: 1844042-1858037 Glycine max
Glyma.16G020400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 1844042-1854041 Glycine max
Glyma.16G020400 10.0kb downstream 10.0kb downstream 13996 true Chr16: 1854042-1868037 Glycine max
Glyma.16G020400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 1858038-1868037 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306017 5265 Fabidae View MSA
124069002 5270 Rosid View MSA
123750864 5271 Pentapetalae View MSA
122788069 5272 Eudicot View MSA
122049266 5273 Angiosperm View MSA
121351391 5274 Embryophyte View MSA
123426567 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.0399 0.0 85.8941   Low
cufflinks 30.3896 0.0 113.647 High  
cufflinks 33.7904 0.0 127.112 High High
cufflinks 31.1255 0.0 115.814 High  
cufflinks 23.5547 0.0 87.7249 High Low
cufflinks 25.6984 0.0 96.7133 High  
cufflinks 28.0354 0.0 103.827 High  
cufflinks 26.0945 0.0 97.247 High  
cufflinks 33.8007 0.0 126.297 High High
cufflinks 1.113       Low
cufflinks 3.07       High
cufflinks 2.475       High
cufflinks 1.122       Low
cufflinks 1.169       Low
cufflinks 2.337        
cufflinks 1.152       Low
cufflinks 1.478        
cufflinks 2.104        
cufflinks 2.177        
cufflinks 1.22        
cufflinks 3.128       High
cufflinks 1.335        
cufflinks 1.605        
cufflinks 2.094        
cufflinks 1.161       Low
cufflinks 2.131        

0 Strain