Gene : Glyma.16G022200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR24093:SF289 - CALCIUM-TRANSPORTING ATPASE 1, ENDOPLASMIC RETICULUM-TYPE-RELATED Genomic Order:  222
Name:  ? Glyma.16G022200 Secondary Identifier:  ? PAC:30560284
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G022200 0.5kb upstream 0.5kb upstream 8513 true Chr16: 2087054-2095566 Glycine max
Glyma.16G022200 0.5kb upstream 0.5kb upstream 500 false Chr16: 2095067-2095566 Glycine max
Glyma.16G022200 0.5kb downstream 0.5kb downstream 8513 true Chr16: 2086554-2095066 Glycine max
Glyma.16G022200 0.5kb downstream 0.5kb downstream 500 false Chr16: 2086554-2087053 Glycine max
Glyma.16G022200 1.0kb upstream 1.0kb upstream 9013 true Chr16: 2087054-2096066 Glycine max
Glyma.16G022200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2095067-2096066 Glycine max
Glyma.16G022200 1.0kb downstream 1.0kb downstream 9013 true Chr16: 2086054-2095066 Glycine max
Glyma.16G022200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2086054-2087053 Glycine max
Glyma.16G022200 2.0kb upstream 2.0kb upstream 10013 true Chr16: 2087054-2097066 Glycine max
Glyma.16G022200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2095067-2097066 Glycine max
Glyma.16G022200 2.0kb downstream 2.0kb downstream 10013 true Chr16: 2085054-2095066 Glycine max
Glyma.16G022200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2085054-2087053 Glycine max
Glyma.16G022200 5.0kb upstream 5.0kb upstream 13013 true Chr16: 2087054-2100066 Glycine max
Glyma.16G022200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2095067-2100066 Glycine max
Glyma.16G022200 5.0kb downstream 5.0kb downstream 13013 true Chr16: 2082054-2095066 Glycine max
Glyma.16G022200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2082054-2087053 Glycine max
Glyma.16G022200 10.0kb upstream 10.0kb upstream 18013 true Chr16: 2087054-2105066 Glycine max
Glyma.16G022200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2095067-2105066 Glycine max
Glyma.16G022200 10.0kb downstream 10.0kb downstream 18013 true Chr16: 2077054-2095066 Glycine max
Glyma.16G022200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2077054-2087053 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302927 5265 Fabidae View MSA
124070166 5270 Rosid View MSA
123740324 5271 Pentapetalae View MSA
122794495 5272 Eudicot View MSA
122046254 5273 Angiosperm View MSA
121349492 5274 Embryophyte View MSA
123427421 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.42242 0.0 8.38058    
cufflinks 1.19964 0.0 5.28393    
cufflinks 8.65649 0.0 29.3068    
cufflinks 1.86921 0.0 7.49978    
cufflinks 6.18327 0.0 21.2681    
cufflinks 57.1932 0.0 265.729 High High
cufflinks 0.377517 0.0 2.83176   Low
cufflinks 5.2993 0.0 18.3045    
cufflinks 5.73877 0.0 19.9884    
cufflinks 3.434       High
cufflinks 0.663        
cufflinks 2.465        
cufflinks 7.866     High High
cufflinks 2.771        
cufflinks 0.068       Low
cufflinks 0.962        
cufflinks 3.237       High
cufflinks 1.246        
cufflinks 0.477        
cufflinks 0.952        
cufflinks 0.43        
cufflinks 1.047        
cufflinks 0.976        
cufflinks 0.565        
cufflinks 0.867        
cufflinks 1.794        

0 Strain