Gene : Glyma.16G013900 G. max Wm82.a2.v1
Defline:  (1 of 4) 2.6.1.2 - Alanine transaminase / Glutamic--pyruvic transaminase Genomic Order:  139
Name:  ? Glyma.16G013900 Secondary Identifier:  ? PAC:30559279
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Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ALANINE-DEG3-PWY Glycine max pathologic  
Gmax ALANINE-SYN2-PWY Glycine max pathologic  
Gmax PWY-7115 Glycine max pathologic  
Gmax PWY-7117 Glycine max pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G013900 0.5kb upstream 0.5kb upstream 6571 true Chr16: 1208240-1214810 Glycine max
Glyma.16G013900 0.5kb upstream 0.5kb upstream 500 false Chr16: 1214311-1214810 Glycine max
Glyma.16G013900 0.5kb downstream 0.5kb downstream 6571 true Chr16: 1207740-1214310 Glycine max
Glyma.16G013900 0.5kb downstream 0.5kb downstream 500 false Chr16: 1207740-1208239 Glycine max
Glyma.16G013900 1.0kb upstream 1.0kb upstream 7071 true Chr16: 1208240-1215310 Glycine max
Glyma.16G013900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 1214311-1215310 Glycine max
Glyma.16G013900 1.0kb downstream 1.0kb downstream 7071 true Chr16: 1207240-1214310 Glycine max
Glyma.16G013900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 1207240-1208239 Glycine max
Glyma.16G013900 2.0kb upstream 2.0kb upstream 8071 true Chr16: 1208240-1216310 Glycine max
Glyma.16G013900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 1214311-1216310 Glycine max
Glyma.16G013900 2.0kb downstream 2.0kb downstream 8071 true Chr16: 1206240-1214310 Glycine max
Glyma.16G013900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 1206240-1208239 Glycine max
Glyma.16G013900 5.0kb upstream 5.0kb upstream 11071 true Chr16: 1208240-1219310 Glycine max
Glyma.16G013900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 1214311-1219310 Glycine max
Glyma.16G013900 5.0kb downstream 5.0kb downstream 11071 true Chr16: 1203240-1214310 Glycine max
Glyma.16G013900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 1203240-1208239 Glycine max
Glyma.16G013900 10.0kb upstream 10.0kb upstream 16071 true Chr16: 1208240-1224310 Glycine max
Glyma.16G013900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 1214311-1224310 Glycine max
Glyma.16G013900 10.0kb downstream 10.0kb downstream 16071 true Chr16: 1198240-1214310 Glycine max
Glyma.16G013900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 1198240-1208239 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301805 5265 Fabidae View MSA
124064256 5270 Rosid View MSA
123749170 5271 Pentapetalae View MSA
122793882 5272 Eudicot View MSA
122043472 5273 Angiosperm View MSA
121347513 5274 Embryophyte View MSA
123427750 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.7534 0.0 52.0918   Low
cufflinks 18.0853 0.0 68.4384    
cufflinks 28.0313 0.0 123.941 High  
cufflinks 32.0759 0.0 126.762 High  
cufflinks 46.2603 0.0 198.694 High High
cufflinks 30.4235 0.0 105.062 High  
cufflinks 17.4404 0.0 57.6762    
cufflinks 26.6175 0.0 115.234 High  
cufflinks 26.2699 0.0 113.017 High  
cufflinks 2.473        
cufflinks 2.087        
cufflinks 2.553        
cufflinks 4.824       High
cufflinks 5.575       High
cufflinks 2.003        
cufflinks 1.241        
cufflinks 1.414        
cufflinks 3.027        
cufflinks 1.649        
cufflinks 1.071       Low
cufflinks 2.95        
cufflinks 1.194       Low
cufflinks 1.151       Low
cufflinks 1.62        
cufflinks 1.056       Low
cufflinks 2.474        

0 Strain