Gene : Glyma.16G016100 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR21649:SF13 - LHCA2 PROTEIN Genomic Order:  161
Name:  ? Glyma.16G016100 Secondary Identifier:  ? PAC:30561097
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G016100 0.5kb upstream 0.5kb upstream 2902 true Chr16: 1404906-1407807 Glycine max
Glyma.16G016100 0.5kb upstream 0.5kb upstream 500 false Chr16: 1407308-1407807 Glycine max
Glyma.16G016100 0.5kb downstream 0.5kb downstream 2902 true Chr16: 1404406-1407307 Glycine max
Glyma.16G016100 0.5kb downstream 0.5kb downstream 500 false Chr16: 1404406-1404905 Glycine max
Glyma.16G016100 1.0kb upstream 1.0kb upstream 3402 true Chr16: 1404906-1408307 Glycine max
Glyma.16G016100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 1407308-1408307 Glycine max
Glyma.16G016100 1.0kb downstream 1.0kb downstream 3402 true Chr16: 1403906-1407307 Glycine max
Glyma.16G016100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 1403906-1404905 Glycine max
Glyma.16G016100 2.0kb upstream 2.0kb upstream 4402 true Chr16: 1404906-1409307 Glycine max
Glyma.16G016100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 1407308-1409307 Glycine max
Glyma.16G016100 2.0kb downstream 2.0kb downstream 4402 true Chr16: 1402906-1407307 Glycine max
Glyma.16G016100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 1402906-1404905 Glycine max
Glyma.16G016100 5.0kb upstream 5.0kb upstream 7402 true Chr16: 1404906-1412307 Glycine max
Glyma.16G016100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 1407308-1412307 Glycine max
Glyma.16G016100 5.0kb downstream 5.0kb downstream 7402 true Chr16: 1399906-1407307 Glycine max
Glyma.16G016100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 1399906-1404905 Glycine max
Glyma.16G016100 10.0kb upstream 10.0kb upstream 12402 true Chr16: 1404906-1417307 Glycine max
Glyma.16G016100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 1407308-1417307 Glycine max
Glyma.16G016100 10.0kb downstream 10.0kb downstream 12402 true Chr16: 1394906-1407307 Glycine max
Glyma.16G016100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 1394906-1404905 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309685 5265 Fabidae View MSA
124065144 5270 Rosid View MSA
123742469 5271 Pentapetalae View MSA
122790167 5272 Eudicot View MSA
122046380 5273 Angiosperm View MSA
121344826 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 293.288 0.0 1113.56 High High
cufflinks 235.973 0.0 843.48 High High
cufflinks 70.5269 0.0 202.203 High  
cufflinks 107.379 0.0 327.369 High  
cufflinks 3.22391 0.0 10.2409   Low
cufflinks 7.22729 0.0 20.6049    
cufflinks 21.8115 0.0 58.1918 High  
cufflinks 76.7629 0.0 223.208 High  
cufflinks 3.39418 0.0 10.6959   Low
cufflinks 132.867     High  
cufflinks 0.121       Low
cufflinks 60.646     High  
cufflinks 0.162        
cufflinks 0.048     Low Low
cufflinks 0.15        
cufflinks 417.966     High High
cufflinks 0.023     Low Low
cufflinks 57.397     High  
cufflinks 127.659     High  
cufflinks 406.803     High High
cufflinks 0.236        
cufflinks 463.59     High High
cufflinks 339.517     High High
cufflinks 0.208        
cufflinks 480.386     High High
cufflinks 0.251        

0 Strain