Gene : Glyma.16G017100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31140:SF4 - B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA1-RELATED Genomic Order:  171
Name:  ? Glyma.16G017100 Secondary Identifier:  ? PAC:30559461
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G017100 0.5kb upstream 0.5kb upstream 3345 true Chr16: 1483694-1487038 Glycine max
Glyma.16G017100 0.5kb upstream 0.5kb upstream 500 false Chr16: 1486539-1487038 Glycine max
Glyma.16G017100 0.5kb downstream 0.5kb downstream 3345 true Chr16: 1483194-1486538 Glycine max
Glyma.16G017100 0.5kb downstream 0.5kb downstream 500 false Chr16: 1483194-1483693 Glycine max
Glyma.16G017100 1.0kb upstream 1.0kb upstream 3845 true Chr16: 1483694-1487538 Glycine max
Glyma.16G017100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 1486539-1487538 Glycine max
Glyma.16G017100 1.0kb downstream 1.0kb downstream 3845 true Chr16: 1482694-1486538 Glycine max
Glyma.16G017100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 1482694-1483693 Glycine max
Glyma.16G017100 2.0kb upstream 2.0kb upstream 4845 true Chr16: 1483694-1488538 Glycine max
Glyma.16G017100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 1486539-1488538 Glycine max
Glyma.16G017100 2.0kb downstream 2.0kb downstream 4845 true Chr16: 1481694-1486538 Glycine max
Glyma.16G017100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 1481694-1483693 Glycine max
Glyma.16G017100 5.0kb upstream 5.0kb upstream 7845 true Chr16: 1483694-1491538 Glycine max
Glyma.16G017100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 1486539-1491538 Glycine max
Glyma.16G017100 5.0kb downstream 5.0kb downstream 7845 true Chr16: 1478694-1486538 Glycine max
Glyma.16G017100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 1478694-1483693 Glycine max
Glyma.16G017100 10.0kb upstream 10.0kb upstream 12845 true Chr16: 1483694-1496538 Glycine max
Glyma.16G017100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 1486539-1496538 Glycine max
Glyma.16G017100 10.0kb downstream 10.0kb downstream 12845 true Chr16: 1473694-1486538 Glycine max
Glyma.16G017100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 1473694-1483693 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313330 5265 Fabidae View MSA
124069436 5270 Rosid View MSA
123743929 5271 Pentapetalae View MSA
122797539 5272 Eudicot View MSA
122049835 5273 Angiosperm View MSA
121349423 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.8308 0.0 38.4514   High
cufflinks 9.36452 0.0 35.8658   High
cufflinks 9.03367 0.0 32.1642    
cufflinks 1.78779 0.0 10.5746    
cufflinks 0.734224 0.0 4.89012   Low
cufflinks 1.13602 0.0 7.93942    
cufflinks 4.36402 0.0 19.3996    
cufflinks 0.380239 0.0 2.36752   Low
cufflinks 4.15448 0.0 18.5969    
cufflinks 0.035     Low Low
cufflinks 0.473        
cufflinks 2.12        
cufflinks 0.054     Low Low
cufflinks 0.006     Low Low
cufflinks 5.656     High  
cufflinks 5.853        
cufflinks 0.528        
cufflinks 2.886        
cufflinks 2.969        
cufflinks 6.649        
cufflinks 0.639        
cufflinks 6.347        
cufflinks 5.177        
cufflinks 0.361        
cufflinks 4.64        
cufflinks 0.413        

0 Strain