Gene : Glyma.16G049100 G. max Wm82.a2.v1
Defline:  (1 of 12) PF01535//PF12854//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  491
Name:  ? Glyma.16G049100 Secondary Identifier:  ? PAC:30561959
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G049100 0.5kb upstream 0.5kb upstream 2820 true Chr16: 4705170-4707989 Glycine max
Glyma.16G049100 0.5kb upstream 0.5kb upstream 500 false Chr16: 4705170-4705669 Glycine max
Glyma.16G049100 0.5kb downstream 0.5kb downstream 2820 true Chr16: 4705670-4708489 Glycine max
Glyma.16G049100 0.5kb downstream 0.5kb downstream 500 false Chr16: 4707990-4708489 Glycine max
Glyma.16G049100 1.0kb upstream 1.0kb upstream 3320 true Chr16: 4704670-4707989 Glycine max
Glyma.16G049100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 4704670-4705669 Glycine max
Glyma.16G049100 1.0kb downstream 1.0kb downstream 3320 true Chr16: 4705670-4708989 Glycine max
Glyma.16G049100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 4707990-4708989 Glycine max
Glyma.16G049100 2.0kb upstream 2.0kb upstream 4320 true Chr16: 4703670-4707989 Glycine max
Glyma.16G049100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 4703670-4705669 Glycine max
Glyma.16G049100 2.0kb downstream 2.0kb downstream 4320 true Chr16: 4705670-4709989 Glycine max
Glyma.16G049100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 4707990-4709989 Glycine max
Glyma.16G049100 5.0kb upstream 5.0kb upstream 7320 true Chr16: 4700670-4707989 Glycine max
Glyma.16G049100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 4700670-4705669 Glycine max
Glyma.16G049100 5.0kb downstream 5.0kb downstream 7320 true Chr16: 4705670-4712989 Glycine max
Glyma.16G049100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 4707990-4712989 Glycine max
Glyma.16G049100 10.0kb upstream 10.0kb upstream 12320 true Chr16: 4695670-4707989 Glycine max
Glyma.16G049100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 4695670-4705669 Glycine max
Glyma.16G049100 10.0kb downstream 10.0kb downstream 12320 true Chr16: 4705670-4717989 Glycine max
Glyma.16G049100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 4707990-4717989 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313078 5265 Fabidae View MSA
124068900 5270 Rosid View MSA
123746563 5271 Pentapetalae View MSA
122790377 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.53435 0.0 1.92885   High
cufflinks 0.324684 0.0 1.20588    
cufflinks 0.408104 0.0 1.4956    
cufflinks 0.303491 0.0 1.13038    
cufflinks 0.222599 0.0 0.841167 Low  
cufflinks 0.259919 0.0 0.975231 Low  
cufflinks 0.318759 0.0 1.18551    
cufflinks 0.189092 0.0 0.71938 Low Low
cufflinks 0.279759 0.0 1.04625    
cufflinks 0.154        
cufflinks 0.098        
cufflinks 0.304       High
cufflinks 0.157        
cufflinks 0.191        
cufflinks 0.041     Low Low
cufflinks 0.155        
cufflinks 0.172        
cufflinks 0.409       High
cufflinks 0.41       High
cufflinks 0.101        
cufflinks 0.14        
cufflinks 0.161        
cufflinks 0.211        
cufflinks 0.088        
cufflinks 0.251        
cufflinks 0.067       Low

0 Strain