Gene : Glyma.16G052400 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  524
Name:  ? Glyma.16G052400 Secondary Identifier:  ? PAC:30559509
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G052400 0.5kb upstream 0.5kb upstream 5020 true Chr16: 5053109-5058128 Glycine max
Glyma.16G052400 0.5kb upstream 0.5kb upstream 500 false Chr16: 5053109-5053608 Glycine max
Glyma.16G052400 0.5kb downstream 0.5kb downstream 5020 true Chr16: 5053609-5058628 Glycine max
Glyma.16G052400 0.5kb downstream 0.5kb downstream 500 false Chr16: 5058129-5058628 Glycine max
Glyma.16G052400 1.0kb upstream 1.0kb upstream 5520 true Chr16: 5052609-5058128 Glycine max
Glyma.16G052400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 5052609-5053608 Glycine max
Glyma.16G052400 1.0kb downstream 1.0kb downstream 5520 true Chr16: 5053609-5059128 Glycine max
Glyma.16G052400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 5058129-5059128 Glycine max
Glyma.16G052400 2.0kb upstream 2.0kb upstream 6520 true Chr16: 5051609-5058128 Glycine max
Glyma.16G052400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 5051609-5053608 Glycine max
Glyma.16G052400 2.0kb downstream 2.0kb downstream 6520 true Chr16: 5053609-5060128 Glycine max
Glyma.16G052400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 5058129-5060128 Glycine max
Glyma.16G052400 5.0kb upstream 5.0kb upstream 9520 true Chr16: 5048609-5058128 Glycine max
Glyma.16G052400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 5048609-5053608 Glycine max
Glyma.16G052400 5.0kb downstream 5.0kb downstream 9520 true Chr16: 5053609-5063128 Glycine max
Glyma.16G052400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 5058129-5063128 Glycine max
Glyma.16G052400 10.0kb upstream 10.0kb upstream 14520 true Chr16: 5043609-5058128 Glycine max
Glyma.16G052400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 5043609-5053608 Glycine max
Glyma.16G052400 10.0kb downstream 10.0kb downstream 14520 true Chr16: 5053609-5068128 Glycine max
Glyma.16G052400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 5058129-5068128 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122316137 5265 Fabidae View MSA
124062168 5270 Rosid View MSA
123736487 5271 Pentapetalae View MSA
122788390 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.0601 0.0 9.13691    
cufflinks 3.37501 0.0 9.98088   High
cufflinks 2.50512 0.0 7.73195    
cufflinks 2.42677 0.0 7.50311    
cufflinks 2.16157 0.0 6.74457    
cufflinks 0.765998 0.0 2.70731   Low
cufflinks 1.74599 0.0 5.62111    
cufflinks 2.78677 0.0 8.44406    
cufflinks 1.85956 0.0 5.9527    
cufflinks 1.099        
cufflinks 0.601        
cufflinks 1.436       High
cufflinks 0.69        
cufflinks 0.515       Low
cufflinks 0.602        
cufflinks 0.97        
cufflinks 1.346       High
cufflinks 0.853        
cufflinks 1.959       High
cufflinks 0.967        
cufflinks 0.379       Low
cufflinks 1.077        
cufflinks 0.966        
cufflinks 0.603        
cufflinks 0.968        
cufflinks 0.623        

0 Strain