Gene : Glyma.16G054500 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31251:SF20 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A-RELATED Genomic Order:  545
Name:  ? Glyma.16G054500 Secondary Identifier:  ? PAC:30559429
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G054500 0.5kb upstream 0.5kb upstream 4682 true Chr16: 5355995-5360676 Glycine max
Glyma.16G054500 0.5kb upstream 0.5kb upstream 500 false Chr16: 5355995-5356494 Glycine max
Glyma.16G054500 0.5kb downstream 0.5kb downstream 4682 true Chr16: 5356495-5361176 Glycine max
Glyma.16G054500 0.5kb downstream 0.5kb downstream 500 false Chr16: 5360677-5361176 Glycine max
Glyma.16G054500 1.0kb upstream 1.0kb upstream 5182 true Chr16: 5355495-5360676 Glycine max
Glyma.16G054500 1.0kb upstream 1.0kb upstream 1000 false Chr16: 5355495-5356494 Glycine max
Glyma.16G054500 1.0kb downstream 1.0kb downstream 5182 true Chr16: 5356495-5361676 Glycine max
Glyma.16G054500 1.0kb downstream 1.0kb downstream 1000 false Chr16: 5360677-5361676 Glycine max
Glyma.16G054500 2.0kb upstream 2.0kb upstream 6182 true Chr16: 5354495-5360676 Glycine max
Glyma.16G054500 2.0kb upstream 2.0kb upstream 2000 false Chr16: 5354495-5356494 Glycine max
Glyma.16G054500 2.0kb downstream 2.0kb downstream 6182 true Chr16: 5356495-5362676 Glycine max
Glyma.16G054500 2.0kb downstream 2.0kb downstream 2000 false Chr16: 5360677-5362676 Glycine max
Glyma.16G054500 5.0kb upstream 5.0kb upstream 9182 true Chr16: 5351495-5360676 Glycine max
Glyma.16G054500 5.0kb upstream 5.0kb upstream 5000 false Chr16: 5351495-5356494 Glycine max
Glyma.16G054500 5.0kb downstream 5.0kb downstream 9182 true Chr16: 5356495-5365676 Glycine max
Glyma.16G054500 5.0kb downstream 5.0kb downstream 5000 false Chr16: 5360677-5365676 Glycine max
Glyma.16G054500 10.0kb upstream 10.0kb upstream 14182 true Chr16: 5346495-5360676 Glycine max
Glyma.16G054500 10.0kb upstream 10.0kb upstream 10000 false Chr16: 5346495-5356494 Glycine max
Glyma.16G054500 10.0kb downstream 10.0kb downstream 14182 true Chr16: 5356495-5370676 Glycine max
Glyma.16G054500 10.0kb downstream 10.0kb downstream 10000 false Chr16: 5360677-5370676 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779477 5273 Angiosperm View MSA
122309811 5265 Fabidae View MSA
124070994 5270 Rosid View MSA
123743013 5271 Pentapetalae View MSA
122770483 5272 Eudicot View MSA
123428908 5275 Viridiplantae View MSA
121051136 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.22642 0.0 18.0976    
cufflinks 12.7339 0.0 37.4192    
cufflinks 8.26618 0.0 31.0283    
cufflinks 10.2308 0.0 31.7379    
cufflinks 7.44093 0.0 24.5339    
cufflinks 11.8551 0.0 38.1111    
cufflinks 1.1824 0.0 6.25348   Low
cufflinks 11.9513 0.0 41.0315    
cufflinks 7.68793 0.0 29.4238    
cufflinks 2.107        
cufflinks 4.177       High
cufflinks 1.929        
cufflinks 0.869       Low
cufflinks 0.824       Low
cufflinks 1.548        
cufflinks 2.367        
cufflinks 1.489        
cufflinks 1.709        
cufflinks 2.647        
cufflinks 2.466        
cufflinks 4.335       High
cufflinks 2.653        
cufflinks 1.933        
cufflinks 3.754       High
cufflinks 1.988        
cufflinks 2.778        

0 Strain