Gene : Glyma.16G041400 G. max Wm82.a2.v1
Defline:  (1 of 1) KOG3262 - H/ACA small nucleolar RNP component GAR1 Genomic Order:  414
Name:  ? Glyma.16G041400 Secondary Identifier:  ? PAC:30560000
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G041400 0.5kb upstream 0.5kb upstream 2762 true Chr16: 3879903-3882664 Glycine max
Glyma.16G041400 0.5kb upstream 0.5kb upstream 500 false Chr16: 3882165-3882664 Glycine max
Glyma.16G041400 0.5kb downstream 0.5kb downstream 2762 true Chr16: 3879403-3882164 Glycine max
Glyma.16G041400 0.5kb downstream 0.5kb downstream 500 false Chr16: 3879403-3879902 Glycine max
Glyma.16G041400 1.0kb upstream 1.0kb upstream 3262 true Chr16: 3879903-3883164 Glycine max
Glyma.16G041400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 3882165-3883164 Glycine max
Glyma.16G041400 1.0kb downstream 1.0kb downstream 3262 true Chr16: 3878903-3882164 Glycine max
Glyma.16G041400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 3878903-3879902 Glycine max
Glyma.16G041400 2.0kb upstream 2.0kb upstream 4262 true Chr16: 3879903-3884164 Glycine max
Glyma.16G041400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 3882165-3884164 Glycine max
Glyma.16G041400 2.0kb downstream 2.0kb downstream 4262 true Chr16: 3877903-3882164 Glycine max
Glyma.16G041400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 3877903-3879902 Glycine max
Glyma.16G041400 5.0kb upstream 5.0kb upstream 7262 true Chr16: 3879903-3887164 Glycine max
Glyma.16G041400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 3882165-3887164 Glycine max
Glyma.16G041400 5.0kb downstream 5.0kb downstream 7262 true Chr16: 3874903-3882164 Glycine max
Glyma.16G041400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 3874903-3879902 Glycine max
Glyma.16G041400 10.0kb upstream 10.0kb upstream 12262 true Chr16: 3879903-3892164 Glycine max
Glyma.16G041400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 3882165-3892164 Glycine max
Glyma.16G041400 10.0kb downstream 10.0kb downstream 12262 true Chr16: 3869903-3882164 Glycine max
Glyma.16G041400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 3869903-3879902 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305807 5265 Fabidae View MSA
124060863 5270 Rosid View MSA
123746440 5271 Pentapetalae View MSA
122789002 5272 Eudicot View MSA
122045887 5273 Angiosperm View MSA
121346687 5274 Embryophyte View MSA
123425060 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.7185 0.0 41.072    
cufflinks 16.6213 0.0 46.0282    
cufflinks 6.49041 0.0 20.1268   Low
cufflinks 9.37362 0.0 27.6245   Low
cufflinks 31.8027 0.0 84.957 High High
cufflinks 18.2245 0.0 49.9714    
cufflinks 26.626 0.0 71.3942 High High
cufflinks 16.3135 0.0 45.2139    
cufflinks 18.167 0.0 49.8668    
cufflinks 3.75        
cufflinks 1.633       Low
cufflinks 3.805        
cufflinks 14.905     High High
cufflinks 19.669     High High
cufflinks 1.288       Low
cufflinks 4.515        
cufflinks 3.657        
cufflinks 3.664        
cufflinks 7.008        
cufflinks 2.617        
cufflinks 2.172        
cufflinks 2.408        
cufflinks 5.331        
cufflinks 1.413       Low
cufflinks 3.26        
cufflinks 3.753        

0 Strain