Gene : Glyma.16G042700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10438:SF245 - THIOREDOXIN-LIKE 1-1, CHLOROPLASTIC-RELATED Genomic Order:  427
Name:  ? Glyma.16G042700 Secondary Identifier:  ? PAC:30560450
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G042700 0.5kb upstream 0.5kb upstream 2993 true Chr16: 3982381-3985373 Glycine max
Glyma.16G042700 0.5kb upstream 0.5kb upstream 500 false Chr16: 3984874-3985373 Glycine max
Glyma.16G042700 0.5kb downstream 0.5kb downstream 2993 true Chr16: 3981881-3984873 Glycine max
Glyma.16G042700 0.5kb downstream 0.5kb downstream 500 false Chr16: 3981881-3982380 Glycine max
Glyma.16G042700 1.0kb upstream 1.0kb upstream 3493 true Chr16: 3982381-3985873 Glycine max
Glyma.16G042700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 3984874-3985873 Glycine max
Glyma.16G042700 1.0kb downstream 1.0kb downstream 3493 true Chr16: 3981381-3984873 Glycine max
Glyma.16G042700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 3981381-3982380 Glycine max
Glyma.16G042700 2.0kb upstream 2.0kb upstream 4493 true Chr16: 3982381-3986873 Glycine max
Glyma.16G042700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 3984874-3986873 Glycine max
Glyma.16G042700 2.0kb downstream 2.0kb downstream 4493 true Chr16: 3980381-3984873 Glycine max
Glyma.16G042700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 3980381-3982380 Glycine max
Glyma.16G042700 5.0kb upstream 5.0kb upstream 7493 true Chr16: 3982381-3989873 Glycine max
Glyma.16G042700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 3984874-3989873 Glycine max
Glyma.16G042700 5.0kb downstream 5.0kb downstream 7493 true Chr16: 3977381-3984873 Glycine max
Glyma.16G042700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 3977381-3982380 Glycine max
Glyma.16G042700 10.0kb upstream 10.0kb upstream 12493 true Chr16: 3982381-3994873 Glycine max
Glyma.16G042700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 3984874-3994873 Glycine max
Glyma.16G042700 10.0kb downstream 10.0kb downstream 12493 true Chr16: 3972381-3984873 Glycine max
Glyma.16G042700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 3972381-3982380 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303235 5265 Fabidae View MSA
124067086 5270 Rosid View MSA
123745414 5271 Pentapetalae View MSA
122792337 5272 Eudicot View MSA
122048222 5273 Angiosperm View MSA
121347781 5274 Embryophyte View MSA
123427936 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.312 0.0 38.8137    
cufflinks 16.8375 0.0 45.2732    
cufflinks 54.8961 0.0 151.642 High High
cufflinks 13.1037 0.0 35.6871    
cufflinks 11.5523 0.0 31.7928    
cufflinks 27.7577 0.0 74.0942 High  
cufflinks 13.9437 0.0 37.8766    
cufflinks 6.58397 0.0 19.1286   Low
cufflinks 11.5224 0.0 31.6554    
cufflinks 4.321       Low
cufflinks 79.442     High High
cufflinks 20.808     High  
cufflinks 6.296       Low
cufflinks 3.905       Low
cufflinks 44.997     High  
cufflinks 20.61     High  
cufflinks 8.859     High  
cufflinks 16.826     High  
cufflinks 11.284     High  
cufflinks 21.026     High  
cufflinks 63.748     High High
cufflinks 11.518     High  
cufflinks 11.45     High  
cufflinks 67.127     High High
cufflinks 22.745     High  
cufflinks 63.944     High High

0 Strain