Gene : Glyma.16G044600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR24095:SF178 - ACETATE--COA LIGASE ACS, CHLOROPLASTIC/GLYOXYSOMAL Genomic Order:  446
Name:  ? Glyma.16G044600 Secondary Identifier:  ? PAC:30561697
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY66-21 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G044600 0.5kb upstream 0.5kb upstream 8075 true Chr16: 4230476-4238550 Glycine max
Glyma.16G044600 0.5kb upstream 0.5kb upstream 500 false Chr16: 4238051-4238550 Glycine max
Glyma.16G044600 0.5kb downstream 0.5kb downstream 8075 true Chr16: 4229976-4238050 Glycine max
Glyma.16G044600 0.5kb downstream 0.5kb downstream 500 false Chr16: 4229976-4230475 Glycine max
Glyma.16G044600 1.0kb upstream 1.0kb upstream 8575 true Chr16: 4230476-4239050 Glycine max
Glyma.16G044600 1.0kb upstream 1.0kb upstream 1000 false Chr16: 4238051-4239050 Glycine max
Glyma.16G044600 1.0kb downstream 1.0kb downstream 8575 true Chr16: 4229476-4238050 Glycine max
Glyma.16G044600 1.0kb downstream 1.0kb downstream 1000 false Chr16: 4229476-4230475 Glycine max
Glyma.16G044600 2.0kb upstream 2.0kb upstream 9575 true Chr16: 4230476-4240050 Glycine max
Glyma.16G044600 2.0kb upstream 2.0kb upstream 2000 false Chr16: 4238051-4240050 Glycine max
Glyma.16G044600 2.0kb downstream 2.0kb downstream 9575 true Chr16: 4228476-4238050 Glycine max
Glyma.16G044600 2.0kb downstream 2.0kb downstream 2000 false Chr16: 4228476-4230475 Glycine max
Glyma.16G044600 5.0kb upstream 5.0kb upstream 12575 true Chr16: 4230476-4243050 Glycine max
Glyma.16G044600 5.0kb upstream 5.0kb upstream 5000 false Chr16: 4238051-4243050 Glycine max
Glyma.16G044600 5.0kb downstream 5.0kb downstream 12575 true Chr16: 4225476-4238050 Glycine max
Glyma.16G044600 5.0kb downstream 5.0kb downstream 5000 false Chr16: 4225476-4230475 Glycine max
Glyma.16G044600 10.0kb upstream 10.0kb upstream 17575 true Chr16: 4230476-4248050 Glycine max
Glyma.16G044600 10.0kb upstream 10.0kb upstream 10000 false Chr16: 4238051-4248050 Glycine max
Glyma.16G044600 10.0kb downstream 10.0kb downstream 17575 true Chr16: 4220476-4238050 Glycine max
Glyma.16G044600 10.0kb downstream 10.0kb downstream 10000 false Chr16: 4220476-4230475 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303292 5265 Fabidae View MSA
124065659 5270 Rosid View MSA
123746880 5271 Pentapetalae View MSA
122789146 5272 Eudicot View MSA
122041906 5273 Angiosperm View MSA
121351540 5274 Embryophyte View MSA
123424340 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.8947 0.0 39.9004    
cufflinks 12.9985 0.0 34.7111    
cufflinks 6.41621 0.0 17.3636   Low
cufflinks 17.2 0.0 46.3331    
cufflinks 28.5457 0.0 79.7413 High  
cufflinks 45.7523 0.0 135.94 High High
cufflinks 21.5053 0.0 58.6481    
cufflinks 12.7821 0.0 34.1296    
cufflinks 30.7199 0.0 86.5303 High  
cufflinks 6.852        
cufflinks 26.875     High High
cufflinks 4.458        
cufflinks 12.033     High  
cufflinks 11.805     High  
cufflinks 38.689     High High
cufflinks 3.788        
cufflinks 4.511        
cufflinks 6.625        
cufflinks 6.167        
cufflinks 3.737        
cufflinks 25.787     High High
cufflinks 4.148        
cufflinks 3.473       Low
cufflinks 12.334     High  
cufflinks 3.546       Low
cufflinks 8.511     High  

0 Strain