Gene : Glyma.16G045700 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23240:SF6 - DNA CROSS-LINK REPAIR 1A PROTEIN Genomic Order:  457
Name:  ? Glyma.16G045700 Secondary Identifier:  ? PAC:30561913
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G045700 0.5kb upstream 0.5kb upstream 4719 true Chr16: 4333271-4337989 Glycine max
Glyma.16G045700 0.5kb upstream 0.5kb upstream 500 false Chr16: 4333271-4333770 Glycine max
Glyma.16G045700 0.5kb downstream 0.5kb downstream 4719 true Chr16: 4333771-4338489 Glycine max
Glyma.16G045700 0.5kb downstream 0.5kb downstream 500 false Chr16: 4337990-4338489 Glycine max
Glyma.16G045700 1.0kb upstream 1.0kb upstream 5219 true Chr16: 4332771-4337989 Glycine max
Glyma.16G045700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 4332771-4333770 Glycine max
Glyma.16G045700 1.0kb downstream 1.0kb downstream 5219 true Chr16: 4333771-4338989 Glycine max
Glyma.16G045700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 4337990-4338989 Glycine max
Glyma.16G045700 2.0kb upstream 2.0kb upstream 6219 true Chr16: 4331771-4337989 Glycine max
Glyma.16G045700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 4331771-4333770 Glycine max
Glyma.16G045700 2.0kb downstream 2.0kb downstream 6219 true Chr16: 4333771-4339989 Glycine max
Glyma.16G045700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 4337990-4339989 Glycine max
Glyma.16G045700 5.0kb upstream 5.0kb upstream 9219 true Chr16: 4328771-4337989 Glycine max
Glyma.16G045700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 4328771-4333770 Glycine max
Glyma.16G045700 5.0kb downstream 5.0kb downstream 9219 true Chr16: 4333771-4342989 Glycine max
Glyma.16G045700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 4337990-4342989 Glycine max
Glyma.16G045700 10.0kb upstream 10.0kb upstream 14219 true Chr16: 4323771-4337989 Glycine max
Glyma.16G045700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 4323771-4333770 Glycine max
Glyma.16G045700 10.0kb downstream 10.0kb downstream 14219 true Chr16: 4333771-4347989 Glycine max
Glyma.16G045700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 4337990-4347989 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296613 5265 Fabidae View MSA
124073622 5270 Rosid View MSA
123741645 5271 Pentapetalae View MSA
122793173 5272 Eudicot View MSA
122046861 5273 Angiosperm View MSA
121351448 5274 Embryophyte View MSA
123426430 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.05267 0.0 9.46933    
cufflinks 1.42544 0.0 7.35395    
cufflinks 2.58292 0.0 14.093   High
cufflinks 1.02463 0.0 6.10838    
cufflinks 1.22891 0.0 4.91492    
cufflinks 0.904572 0.0 3.92626    
cufflinks 0.63645 0.0 4.97429   Low
cufflinks 1.90504 0.0 6.88414    
cufflinks 3.19428 0.0 15.483   High
cufflinks 0.715       High
cufflinks 0.436        
cufflinks 0.395        
cufflinks 0.353        
cufflinks 0.275        
cufflinks 1.118       High
cufflinks 0.223       Low
cufflinks 1.08       High
cufflinks 0.264        
cufflinks 0.364        
cufflinks 0.183       Low
cufflinks 0.318        
cufflinks 0.203       Low
cufflinks 0.564        
cufflinks 0.604        
cufflinks 0.243        
cufflinks 0.644        

0 Strain