Gene : Glyma.16G035400 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR11618:SF4 - TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT Genomic Order:  354
Name:  ? Glyma.16G035400 Secondary Identifier:  ? PAC:30561981
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G035400 0.5kb upstream 0.5kb upstream 14393 true Chr16: 3348514-3362906 Glycine max
Glyma.16G035400 0.5kb upstream 0.5kb upstream 500 false Chr16: 3362407-3362906 Glycine max
Glyma.16G035400 0.5kb downstream 0.5kb downstream 14393 true Chr16: 3348014-3362406 Glycine max
Glyma.16G035400 0.5kb downstream 0.5kb downstream 500 false Chr16: 3348014-3348513 Glycine max
Glyma.16G035400 1.0kb upstream 1.0kb upstream 14893 true Chr16: 3348514-3363406 Glycine max
Glyma.16G035400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 3362407-3363406 Glycine max
Glyma.16G035400 1.0kb downstream 1.0kb downstream 14893 true Chr16: 3347514-3362406 Glycine max
Glyma.16G035400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 3347514-3348513 Glycine max
Glyma.16G035400 2.0kb upstream 2.0kb upstream 15893 true Chr16: 3348514-3364406 Glycine max
Glyma.16G035400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 3362407-3364406 Glycine max
Glyma.16G035400 2.0kb downstream 2.0kb downstream 15893 true Chr16: 3346514-3362406 Glycine max
Glyma.16G035400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 3346514-3348513 Glycine max
Glyma.16G035400 5.0kb upstream 5.0kb upstream 18893 true Chr16: 3348514-3367406 Glycine max
Glyma.16G035400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 3362407-3367406 Glycine max
Glyma.16G035400 5.0kb downstream 5.0kb downstream 18893 true Chr16: 3343514-3362406 Glycine max
Glyma.16G035400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 3343514-3348513 Glycine max
Glyma.16G035400 10.0kb upstream 10.0kb upstream 23893 true Chr16: 3348514-3372406 Glycine max
Glyma.16G035400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 3362407-3372406 Glycine max
Glyma.16G035400 10.0kb downstream 10.0kb downstream 23893 true Chr16: 3338514-3362406 Glycine max
Glyma.16G035400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 3338514-3348513 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311198 5265 Fabidae View MSA
124069197 5270 Rosid View MSA
123746124 5271 Pentapetalae View MSA
122796668 5272 Eudicot View MSA
122049145 5273 Angiosperm View MSA
121351360 5274 Embryophyte View MSA
123427604 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.13591 0.0 21.8651   High
cufflinks 3.41944 0.0 9.86414    
cufflinks 5.92289 0.0 16.16    
cufflinks 3.63697 0.0 10.3916    
cufflinks 2.79664 0.0 8.28825    
cufflinks 2.37595 0.0 7.18931   Low
cufflinks 6.95817 0.0 18.8564   High
cufflinks 3.5073 0.0 10.091    
cufflinks 3.64903 0.0 10.4512    
cufflinks 0.603       Low
cufflinks 0.854        
cufflinks 0.853        
cufflinks 0.557       Low
cufflinks 0.485       Low
cufflinks 1.106        
cufflinks 1.149        
cufflinks 0.619        
cufflinks 0.826        
cufflinks 0.879        
cufflinks 1.333       High
cufflinks 0.656        
cufflinks 1.293       High
cufflinks 1.024        
cufflinks 0.966        
cufflinks 1.262       High
cufflinks 0.58       Low

0 Strain