Gene : Glyma.16G025200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12526:SF315 - GDP-MAN:MAN(3)GLCNAC(2)-PP-DOL ALPHA-1,2-MANNOSYLTRANSFERASE Genomic Order:  252
Name:  ? Glyma.16G025200 Secondary Identifier:  ? PAC:30559142
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G025200 0.5kb upstream 0.5kb upstream 5608 true Chr16: 2430679-2436286 Glycine max
Glyma.16G025200 0.5kb upstream 0.5kb upstream 500 false Chr16: 2435787-2436286 Glycine max
Glyma.16G025200 0.5kb downstream 0.5kb downstream 5608 true Chr16: 2430179-2435786 Glycine max
Glyma.16G025200 0.5kb downstream 0.5kb downstream 500 false Chr16: 2430179-2430678 Glycine max
Glyma.16G025200 1.0kb upstream 1.0kb upstream 6108 true Chr16: 2430679-2436786 Glycine max
Glyma.16G025200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2435787-2436786 Glycine max
Glyma.16G025200 1.0kb downstream 1.0kb downstream 6108 true Chr16: 2429679-2435786 Glycine max
Glyma.16G025200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2429679-2430678 Glycine max
Glyma.16G025200 2.0kb upstream 2.0kb upstream 7108 true Chr16: 2430679-2437786 Glycine max
Glyma.16G025200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2435787-2437786 Glycine max
Glyma.16G025200 2.0kb downstream 2.0kb downstream 7108 true Chr16: 2428679-2435786 Glycine max
Glyma.16G025200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2428679-2430678 Glycine max
Glyma.16G025200 5.0kb upstream 5.0kb upstream 10108 true Chr16: 2430679-2440786 Glycine max
Glyma.16G025200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2435787-2440786 Glycine max
Glyma.16G025200 5.0kb downstream 5.0kb downstream 10108 true Chr16: 2425679-2435786 Glycine max
Glyma.16G025200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2425679-2430678 Glycine max
Glyma.16G025200 10.0kb upstream 10.0kb upstream 15108 true Chr16: 2430679-2445786 Glycine max
Glyma.16G025200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2435787-2445786 Glycine max
Glyma.16G025200 10.0kb downstream 10.0kb downstream 15108 true Chr16: 2420679-2435786 Glycine max
Glyma.16G025200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2420679-2430678 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306545 5265 Fabidae View MSA
124069266 5270 Rosid View MSA
123741917 5271 Pentapetalae View MSA
122794409 5272 Eudicot View MSA
122048989 5273 Angiosperm View MSA
121348193 5274 Embryophyte View MSA
123425539 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.19852 0.0 27.5272    
cufflinks 5.87392 0.0 26.6786    
cufflinks 7.53364 0.0 32.4592    
cufflinks 8.38659 0.0 34.2723    
cufflinks 5.93163 0.0 26.4963    
cufflinks 4.35342 0.0 24.9452   Low
cufflinks 9.2139 0.0 37.0022   High
cufflinks 7.6243 0.0 35.3484    
cufflinks 7.59104 0.0 28.3422    
cufflinks 0.428        
cufflinks 0.488        
cufflinks 0.54        
cufflinks 0.322       Low
cufflinks 0.35       Low
cufflinks 0.509        
cufflinks 0.394        
cufflinks 0.399        
cufflinks 0.586       High
cufflinks 0.572       High
cufflinks 0.4        
cufflinks 0.422        
cufflinks 0.397        
cufflinks 0.412        
cufflinks 0.674       High
cufflinks 0.355       Low
cufflinks 0.48        

0 Strain