Gene : Glyma.16G026900 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31901:SF3 - JASMONIC ACID-AMIDO SYNTHETASE JAR1 Genomic Order:  269
Name:  ? Glyma.16G026900 Secondary Identifier:  ? PAC:30560170
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G026900 0.5kb upstream 0.5kb upstream 5192 true Chr16: 2607621-2612812 Glycine max
Glyma.16G026900 0.5kb upstream 0.5kb upstream 500 false Chr16: 2612313-2612812 Glycine max
Glyma.16G026900 0.5kb downstream 0.5kb downstream 5192 true Chr16: 2607121-2612312 Glycine max
Glyma.16G026900 0.5kb downstream 0.5kb downstream 500 false Chr16: 2607121-2607620 Glycine max
Glyma.16G026900 1.0kb upstream 1.0kb upstream 5692 true Chr16: 2607621-2613312 Glycine max
Glyma.16G026900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2612313-2613312 Glycine max
Glyma.16G026900 1.0kb downstream 1.0kb downstream 5692 true Chr16: 2606621-2612312 Glycine max
Glyma.16G026900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2606621-2607620 Glycine max
Glyma.16G026900 2.0kb upstream 2.0kb upstream 6692 true Chr16: 2607621-2614312 Glycine max
Glyma.16G026900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2612313-2614312 Glycine max
Glyma.16G026900 2.0kb downstream 2.0kb downstream 6692 true Chr16: 2605621-2612312 Glycine max
Glyma.16G026900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2605621-2607620 Glycine max
Glyma.16G026900 5.0kb upstream 5.0kb upstream 9692 true Chr16: 2607621-2617312 Glycine max
Glyma.16G026900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2612313-2617312 Glycine max
Glyma.16G026900 5.0kb downstream 5.0kb downstream 9692 true Chr16: 2602621-2612312 Glycine max
Glyma.16G026900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2602621-2607620 Glycine max
Glyma.16G026900 10.0kb upstream 10.0kb upstream 14692 true Chr16: 2607621-2622312 Glycine max
Glyma.16G026900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2612313-2622312 Glycine max
Glyma.16G026900 10.0kb downstream 10.0kb downstream 14692 true Chr16: 2597621-2612312 Glycine max
Glyma.16G026900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2597621-2607620 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122255139 5265 Fabidae View MSA
124063080 5270 Rosid View MSA
123741688 5271 Pentapetalae View MSA
122793518 5272 Eudicot View MSA
122043357 5273 Angiosperm View MSA
121349637 5274 Embryophyte View MSA
123381383 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.9834 0.0 140.129 High High
cufflinks 0.245546 0.0 1.62419 Low Low
cufflinks 8.98715 0.0 34.4878    
cufflinks 0.330368 0.0 2.03979   Low
cufflinks 12.7751 0.0 43.3327    
cufflinks 15.1292 0.0 51.5838    
cufflinks 2.55249 0.0 15.949    
cufflinks 0.889621 0.0 6.46167    
cufflinks 22.4813 0.0 100.054 High  
cufflinks 0.069     Low Low
cufflinks 2.656        
cufflinks 1.799        
cufflinks 1.349        
cufflinks 0.8        
cufflinks 5.156       High
cufflinks 0.473        
cufflinks 1.091        
cufflinks 3.115        
cufflinks 0.089     Low Low
cufflinks 0.503        
cufflinks 3.3        
cufflinks 0.759        
cufflinks 0.588        
cufflinks 3.711       High
cufflinks 0.438        
cufflinks 2.923        

0 Strain