Gene : Glyma.16G029500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR21668 - EIF-1A Genomic Order:  295
Name:  ? Glyma.16G029500 Secondary Identifier:  ? PAC:30560193
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G029500 0.5kb upstream 0.5kb upstream 1498 true Chr16: 2805237-2806734 Glycine max
Glyma.16G029500 0.5kb upstream 0.5kb upstream 500 false Chr16: 2806235-2806734 Glycine max
Glyma.16G029500 0.5kb downstream 0.5kb downstream 1498 true Chr16: 2804737-2806234 Glycine max
Glyma.16G029500 0.5kb downstream 0.5kb downstream 500 false Chr16: 2804737-2805236 Glycine max
Glyma.16G029500 1.0kb upstream 1.0kb upstream 1998 true Chr16: 2805237-2807234 Glycine max
Glyma.16G029500 1.0kb upstream 1.0kb upstream 1000 false Chr16: 2806235-2807234 Glycine max
Glyma.16G029500 1.0kb downstream 1.0kb downstream 1998 true Chr16: 2804237-2806234 Glycine max
Glyma.16G029500 1.0kb downstream 1.0kb downstream 1000 false Chr16: 2804237-2805236 Glycine max
Glyma.16G029500 2.0kb upstream 2.0kb upstream 2998 true Chr16: 2805237-2808234 Glycine max
Glyma.16G029500 2.0kb upstream 2.0kb upstream 2000 false Chr16: 2806235-2808234 Glycine max
Glyma.16G029500 2.0kb downstream 2.0kb downstream 2998 true Chr16: 2803237-2806234 Glycine max
Glyma.16G029500 2.0kb downstream 2.0kb downstream 2000 false Chr16: 2803237-2805236 Glycine max
Glyma.16G029500 5.0kb upstream 5.0kb upstream 5998 true Chr16: 2805237-2811234 Glycine max
Glyma.16G029500 5.0kb upstream 5.0kb upstream 5000 false Chr16: 2806235-2811234 Glycine max
Glyma.16G029500 5.0kb downstream 5.0kb downstream 5998 true Chr16: 2800237-2806234 Glycine max
Glyma.16G029500 5.0kb downstream 5.0kb downstream 5000 false Chr16: 2800237-2805236 Glycine max
Glyma.16G029500 10.0kb upstream 10.0kb upstream 10998 true Chr16: 2805237-2816234 Glycine max
Glyma.16G029500 10.0kb upstream 10.0kb upstream 10000 false Chr16: 2806235-2816234 Glycine max
Glyma.16G029500 10.0kb downstream 10.0kb downstream 10998 true Chr16: 2795237-2806234 Glycine max
Glyma.16G029500 10.0kb downstream 10.0kb downstream 10000 false Chr16: 2795237-2805236 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122247205 5265 Fabidae Singleton cluster - no MSA
124067350 5270 Rosid View MSA
123749124 5271 Pentapetalae View MSA
122789078 5272 Eudicot View MSA
122047152 5273 Angiosperm View MSA
121349077 5274 Embryophyte View MSA
123428812 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.3973 0.0 55.0011    
cufflinks 13.5349 0.0 37.6311    
cufflinks 8.90317 0.0 26.04   Low
cufflinks 20.106 0.0 54.2987 High  
cufflinks 16.4323 0.0 44.7192    
cufflinks 25.7774 0.0 68.952 High High
cufflinks 19.4509 0.0 52.5533    
cufflinks 23.5153 0.0 63.1299 High  
cufflinks 16.1019 0.0 44.036    
cufflinks 12.909     High High
cufflinks 7.394     High  
cufflinks 8.621     High  
cufflinks 14.559     High High
cufflinks 13.911     High High
cufflinks 3.585       Low
cufflinks 5.039        
cufflinks 13.787     High High
cufflinks 8.899     High  
cufflinks 9.629     High  
cufflinks 4.175       Low
cufflinks 8.133     High  
cufflinks 4.71       Low
cufflinks 4.825       Low
cufflinks 9.412     High  
cufflinks 4.533       Low
cufflinks 9.847     High  

0 Strain