Gene : Glyma.16G084300 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR23130:SF80 - AUXIN-INDUCED IN ROOT CULTURES PROTEIN 12 Genomic Order:  843
Name:  ? Glyma.16G084300 Secondary Identifier:  ? PAC:30559779
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G084300 0.5kb upstream 0.5kb upstream 1978 true Chr16: 9765028-9767005 Glycine max
Glyma.16G084300 0.5kb upstream 0.5kb upstream 500 false Chr16: 9766506-9767005 Glycine max
Glyma.16G084300 0.5kb downstream 0.5kb downstream 1978 true Chr16: 9764528-9766505 Glycine max
Glyma.16G084300 0.5kb downstream 0.5kb downstream 500 false Chr16: 9764528-9765027 Glycine max
Glyma.16G084300 1.0kb upstream 1.0kb upstream 2478 true Chr16: 9765028-9767505 Glycine max
Glyma.16G084300 1.0kb upstream 1.0kb upstream 1000 false Chr16: 9766506-9767505 Glycine max
Glyma.16G084300 1.0kb downstream 1.0kb downstream 2478 true Chr16: 9764028-9766505 Glycine max
Glyma.16G084300 1.0kb downstream 1.0kb downstream 1000 false Chr16: 9764028-9765027 Glycine max
Glyma.16G084300 2.0kb upstream 2.0kb upstream 3478 true Chr16: 9765028-9768505 Glycine max
Glyma.16G084300 2.0kb upstream 2.0kb upstream 2000 false Chr16: 9766506-9768505 Glycine max
Glyma.16G084300 2.0kb downstream 2.0kb downstream 3478 true Chr16: 9763028-9766505 Glycine max
Glyma.16G084300 2.0kb downstream 2.0kb downstream 2000 false Chr16: 9763028-9765027 Glycine max
Glyma.16G084300 5.0kb upstream 5.0kb upstream 6478 true Chr16: 9765028-9771505 Glycine max
Glyma.16G084300 5.0kb upstream 5.0kb upstream 5000 false Chr16: 9766506-9771505 Glycine max
Glyma.16G084300 5.0kb downstream 5.0kb downstream 6478 true Chr16: 9760028-9766505 Glycine max
Glyma.16G084300 5.0kb downstream 5.0kb downstream 5000 false Chr16: 9760028-9765027 Glycine max
Glyma.16G084300 10.0kb upstream 10.0kb upstream 11478 true Chr16: 9765028-9776505 Glycine max
Glyma.16G084300 10.0kb upstream 10.0kb upstream 10000 false Chr16: 9766506-9776505 Glycine max
Glyma.16G084300 10.0kb downstream 10.0kb downstream 11478 true Chr16: 9755028-9766505 Glycine max
Glyma.16G084300 10.0kb downstream 10.0kb downstream 10000 false Chr16: 9755028-9765027 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306683 5265 Fabidae View MSA
124071203 5270 Rosid View MSA
123745343 5271 Pentapetalae View MSA
122771463 5272 Eudicot View MSA
122050143 5273 Angiosperm View MSA
121311761 5274 Embryophyte View MSA
123349016 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.28344 0.0 23.8167   Low
cufflinks 15.7242 0.0 42.7573    
cufflinks 5.57246 0.0 17.1271   Low
cufflinks 25.9574 0.0 69.2934 High  
cufflinks 48.9293 0.0 133.259 High High
cufflinks 31.0949 0.0 83.0334 High  
cufflinks 10.9683 0.0 30.4336    
cufflinks 15.5212 0.0 42.2015    
cufflinks 21.9504 0.0 58.7211 High  
cufflinks 44.741     High High
cufflinks 10.24     High  
cufflinks 5.54        
cufflinks 27.648     High  
cufflinks 31.255     High  
cufflinks 9.491     High  
cufflinks 4.966        
cufflinks 188.974     High High
cufflinks 8.963     High  
cufflinks 10.517     High  
cufflinks 1.71       Low
cufflinks 8.942     High  
cufflinks 2.856       Low
cufflinks 7.418        
cufflinks 13.453     High  
cufflinks 1.955       Low
cufflinks 20.503     High  

0 Strain