Gene : Glyma.16G071100 G. max Wm82.a2.v1
Defline:  (1 of 2) PF08170 - POPLD (NUC188) domain (POPLD) Genomic Order:  711
Name:  ? Glyma.16G071100 Secondary Identifier:  ? PAC:30562017
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G071100 0.5kb upstream 0.5kb upstream 7296 true Chr16: 7129360-7136655 Glycine max
Glyma.16G071100 0.5kb upstream 0.5kb upstream 500 false Chr16: 7136156-7136655 Glycine max
Glyma.16G071100 0.5kb downstream 0.5kb downstream 7296 true Chr16: 7128860-7136155 Glycine max
Glyma.16G071100 0.5kb downstream 0.5kb downstream 500 false Chr16: 7128860-7129359 Glycine max
Glyma.16G071100 1.0kb upstream 1.0kb upstream 7796 true Chr16: 7129360-7137155 Glycine max
Glyma.16G071100 1.0kb upstream 1.0kb upstream 1000 false Chr16: 7136156-7137155 Glycine max
Glyma.16G071100 1.0kb downstream 1.0kb downstream 7796 true Chr16: 7128360-7136155 Glycine max
Glyma.16G071100 1.0kb downstream 1.0kb downstream 1000 false Chr16: 7128360-7129359 Glycine max
Glyma.16G071100 2.0kb upstream 2.0kb upstream 8796 true Chr16: 7129360-7138155 Glycine max
Glyma.16G071100 2.0kb upstream 2.0kb upstream 2000 false Chr16: 7136156-7138155 Glycine max
Glyma.16G071100 2.0kb downstream 2.0kb downstream 8796 true Chr16: 7127360-7136155 Glycine max
Glyma.16G071100 2.0kb downstream 2.0kb downstream 2000 false Chr16: 7127360-7129359 Glycine max
Glyma.16G071100 5.0kb upstream 5.0kb upstream 11796 true Chr16: 7129360-7141155 Glycine max
Glyma.16G071100 5.0kb upstream 5.0kb upstream 5000 false Chr16: 7136156-7141155 Glycine max
Glyma.16G071100 5.0kb downstream 5.0kb downstream 11796 true Chr16: 7124360-7136155 Glycine max
Glyma.16G071100 5.0kb downstream 5.0kb downstream 5000 false Chr16: 7124360-7129359 Glycine max
Glyma.16G071100 10.0kb upstream 10.0kb upstream 16796 true Chr16: 7129360-7146155 Glycine max
Glyma.16G071100 10.0kb upstream 10.0kb upstream 10000 false Chr16: 7136156-7146155 Glycine max
Glyma.16G071100 10.0kb downstream 10.0kb downstream 16796 true Chr16: 7119360-7136155 Glycine max
Glyma.16G071100 10.0kb downstream 10.0kb downstream 10000 false Chr16: 7119360-7129359 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306842 5265 Fabidae View MSA
124069043 5270 Rosid View MSA
123740303 5271 Pentapetalae View MSA
122791555 5272 Eudicot View MSA
122047231 5273 Angiosperm View MSA
121344727 5274 Embryophyte View MSA
123380091 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.19985 0.0 8.23031    
cufflinks 1.59196 0.0 5.01173    
cufflinks 1.43591 0.0 6.01991    
cufflinks 0.71489 0.0 2.82574   Low
cufflinks 3.03538 0.0 12.058   High
cufflinks 0.981605 0.0 3.65651    
cufflinks 1.91792 0.0 5.7717    
cufflinks 1.1714 0.0 4.0648    
cufflinks 1.37701 0.0 4.54574    
cufflinks 0.305        
cufflinks 0.168       Low
cufflinks 0.573        
cufflinks 1.15       High
cufflinks 1.489       High
cufflinks 0.109       Low
cufflinks 0.683        
cufflinks 0.229        
cufflinks 0.781        
cufflinks 0.673        
cufflinks 0.831        
cufflinks 0.234        
cufflinks 0.856        
cufflinks 0.821        
cufflinks 0.229        
cufflinks 0.87        
cufflinks 0.248        

0 Strain