Gene : Glyma.16G167800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11472:SF1 - TFIIH BASAL TRANSCRIPTION FACTOR COMPLEX HELICASE XPD SUBUNIT Genomic Order:  1678
Name:  ? Glyma.16G167800 Secondary Identifier:  ? PAC:30559348
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G167800 0.5kb upstream 0.5kb upstream 6819 true Chr16: 32771662-32778480 Glycine max
Glyma.16G167800 0.5kb upstream 0.5kb upstream 500 false Chr16: 32771662-32772161 Glycine max
Glyma.16G167800 0.5kb downstream 0.5kb downstream 6819 true Chr16: 32772162-32778980 Glycine max
Glyma.16G167800 0.5kb downstream 0.5kb downstream 500 false Chr16: 32778481-32778980 Glycine max
Glyma.16G167800 1.0kb upstream 1.0kb upstream 7319 true Chr16: 32771162-32778480 Glycine max
Glyma.16G167800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 32771162-32772161 Glycine max
Glyma.16G167800 1.0kb downstream 1.0kb downstream 7319 true Chr16: 32772162-32779480 Glycine max
Glyma.16G167800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 32778481-32779480 Glycine max
Glyma.16G167800 2.0kb upstream 2.0kb upstream 8319 true Chr16: 32770162-32778480 Glycine max
Glyma.16G167800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 32770162-32772161 Glycine max
Glyma.16G167800 2.0kb downstream 2.0kb downstream 8319 true Chr16: 32772162-32780480 Glycine max
Glyma.16G167800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 32778481-32780480 Glycine max
Glyma.16G167800 5.0kb upstream 5.0kb upstream 11319 true Chr16: 32767162-32778480 Glycine max
Glyma.16G167800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 32767162-32772161 Glycine max
Glyma.16G167800 5.0kb downstream 5.0kb downstream 11319 true Chr16: 32772162-32783480 Glycine max
Glyma.16G167800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 32778481-32783480 Glycine max
Glyma.16G167800 10.0kb upstream 10.0kb upstream 16319 true Chr16: 32762162-32778480 Glycine max
Glyma.16G167800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 32762162-32772161 Glycine max
Glyma.16G167800 10.0kb downstream 10.0kb downstream 16319 true Chr16: 32772162-32788480 Glycine max
Glyma.16G167800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 32778481-32788480 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304369 5265 Fabidae View MSA
124062855 5270 Rosid View MSA
123737964 5271 Pentapetalae View MSA
122790118 5272 Eudicot View MSA
122046497 5273 Angiosperm View MSA
121344254 5274 Embryophyte View MSA
123426727 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.50682 0.0 9.99583    
cufflinks 4.88667 0.0 13.4959    
cufflinks 4.16245 0.0 11.6604    
cufflinks 4.30314 0.0 12.0113    
cufflinks 4.70483 0.0 13.0027    
cufflinks 2.48708 0.0 7.39057   Low
cufflinks 4.84006 0.0 13.3627    
cufflinks 4.21167 0.0 11.7922    
cufflinks 3.73459 0.0 10.5667    
cufflinks 1.756        
cufflinks 1.258       Low
cufflinks 2.632        
cufflinks 2.774        
cufflinks 3.196        
cufflinks 1.296       Low
cufflinks 3.872       High
cufflinks 1.406       Low
cufflinks 2.689        
cufflinks 3.745        
cufflinks 4.784       High
cufflinks 2.041        
cufflinks 4.144       High
cufflinks 3.204        
cufflinks 1.664        
cufflinks 3.853        
cufflinks 2.114        

0 Strain