Gene : Glyma.16G153900 G. max Wm82.a2.v1
Defline:  (1 of 1) PTHR10003:SF31 - SUPEROXIDE DISMUTASE [CU-ZN] 3 Genomic Order:  1539
Name:  ? Glyma.16G153900 Secondary Identifier:  ? PAC:30561241
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax DETOX1-PWY Glycine max pathologic  
Gmax DETOX1-PWY-1 Glycine max pathologic  
Gmax PWY-6854 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G153900 0.5kb upstream 0.5kb upstream 4205 true Chr16: 31445530-31449734 Glycine max
Glyma.16G153900 0.5kb upstream 0.5kb upstream 500 false Chr16: 31449235-31449734 Glycine max
Glyma.16G153900 0.5kb downstream 0.5kb downstream 4205 true Chr16: 31445030-31449234 Glycine max
Glyma.16G153900 0.5kb downstream 0.5kb downstream 500 false Chr16: 31445030-31445529 Glycine max
Glyma.16G153900 1.0kb upstream 1.0kb upstream 4705 true Chr16: 31445530-31450234 Glycine max
Glyma.16G153900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 31449235-31450234 Glycine max
Glyma.16G153900 1.0kb downstream 1.0kb downstream 4705 true Chr16: 31444530-31449234 Glycine max
Glyma.16G153900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 31444530-31445529 Glycine max
Glyma.16G153900 2.0kb upstream 2.0kb upstream 5705 true Chr16: 31445530-31451234 Glycine max
Glyma.16G153900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 31449235-31451234 Glycine max
Glyma.16G153900 2.0kb downstream 2.0kb downstream 5705 true Chr16: 31443530-31449234 Glycine max
Glyma.16G153900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 31443530-31445529 Glycine max
Glyma.16G153900 5.0kb upstream 5.0kb upstream 8705 true Chr16: 31445530-31454234 Glycine max
Glyma.16G153900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 31449235-31454234 Glycine max
Glyma.16G153900 5.0kb downstream 5.0kb downstream 8705 true Chr16: 31440530-31449234 Glycine max
Glyma.16G153900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 31440530-31445529 Glycine max
Glyma.16G153900 10.0kb upstream 10.0kb upstream 13705 true Chr16: 31445530-31459234 Glycine max
Glyma.16G153900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 31449235-31459234 Glycine max
Glyma.16G153900 10.0kb downstream 10.0kb downstream 13705 true Chr16: 31435530-31449234 Glycine max
Glyma.16G153900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 31435530-31445529 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302817 5265 Fabidae View MSA
124071759 5270 Rosid View MSA
123743890 5271 Pentapetalae View MSA
122797763 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.5507 0.0 99.8287 High High
cufflinks 17.008 0.0 67.7476    
cufflinks 14.2001 0.0 60.3684   Low
cufflinks 19.0284 0.0 71.0484    
cufflinks 19.3185 0.0 71.8403    
cufflinks 14.4073 0.0 57.9721   Low
cufflinks 24.4203 0.0 87.2361 High  
cufflinks 16.5488 0.0 54.5936    
cufflinks 34.9376 0.0 120.316 High High
cufflinks 0.969        
cufflinks 0.927        
cufflinks 1.297        
cufflinks 0.563       Low
cufflinks 0.469       Low
cufflinks 2.843       High
cufflinks 1.49        
cufflinks 1.042        
cufflinks 1.307        
cufflinks 1.092        
cufflinks 2.001       High
cufflinks 0.851        
cufflinks 1.916       High
cufflinks 1.684        
cufflinks 0.703        
cufflinks 1.705        
cufflinks 0.597       Low

0 Strain