Gene : Glyma.16G154300 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21087:SF4 - INACTIVE SHIKIMATE KINASE LIKE 1, CHLOROPLASTIC-RELATED Genomic Order:  1543
Name:  ? Glyma.16G154300 Secondary Identifier:  ? PAC:30560580
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G154300 0.5kb upstream 0.5kb upstream 4054 true Chr16: 31472047-31476100 Glycine max
Glyma.16G154300 0.5kb upstream 0.5kb upstream 500 false Chr16: 31475601-31476100 Glycine max
Glyma.16G154300 0.5kb downstream 0.5kb downstream 4054 true Chr16: 31471547-31475600 Glycine max
Glyma.16G154300 0.5kb downstream 0.5kb downstream 500 false Chr16: 31471547-31472046 Glycine max
Glyma.16G154300 1.0kb upstream 1.0kb upstream 4554 true Chr16: 31472047-31476600 Glycine max
Glyma.16G154300 1.0kb upstream 1.0kb upstream 1000 false Chr16: 31475601-31476600 Glycine max
Glyma.16G154300 1.0kb downstream 1.0kb downstream 4554 true Chr16: 31471047-31475600 Glycine max
Glyma.16G154300 1.0kb downstream 1.0kb downstream 1000 false Chr16: 31471047-31472046 Glycine max
Glyma.16G154300 2.0kb upstream 2.0kb upstream 5554 true Chr16: 31472047-31477600 Glycine max
Glyma.16G154300 2.0kb upstream 2.0kb upstream 2000 false Chr16: 31475601-31477600 Glycine max
Glyma.16G154300 2.0kb downstream 2.0kb downstream 5554 true Chr16: 31470047-31475600 Glycine max
Glyma.16G154300 2.0kb downstream 2.0kb downstream 2000 false Chr16: 31470047-31472046 Glycine max
Glyma.16G154300 5.0kb upstream 5.0kb upstream 8554 true Chr16: 31472047-31480600 Glycine max
Glyma.16G154300 5.0kb upstream 5.0kb upstream 5000 false Chr16: 31475601-31480600 Glycine max
Glyma.16G154300 5.0kb downstream 5.0kb downstream 8554 true Chr16: 31467047-31475600 Glycine max
Glyma.16G154300 5.0kb downstream 5.0kb downstream 5000 false Chr16: 31467047-31472046 Glycine max
Glyma.16G154300 10.0kb upstream 10.0kb upstream 13554 true Chr16: 31472047-31485600 Glycine max
Glyma.16G154300 10.0kb upstream 10.0kb upstream 10000 false Chr16: 31475601-31485600 Glycine max
Glyma.16G154300 10.0kb downstream 10.0kb downstream 13554 true Chr16: 31462047-31475600 Glycine max
Glyma.16G154300 10.0kb downstream 10.0kb downstream 10000 false Chr16: 31462047-31472046 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305408 5265 Fabidae View MSA
124073160 5270 Rosid View MSA
123746904 5271 Pentapetalae View MSA
122797267 5272 Eudicot View MSA
122046124 5273 Angiosperm View MSA
121349272 5274 Embryophyte View MSA
123425467 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.59139 0.0 31.7667    
cufflinks 6.95468 0.0 25.0241    
cufflinks 9.51296 0.0 31.5738    
cufflinks 6.90688 0.0 24.8618    
cufflinks 3.53766 0.0 15.6939   Low
cufflinks 13.037 0.0 47.0108   High
cufflinks 8.7774 0.0 29.8627    
cufflinks 3.52729 0.0 15.6243   Low
cufflinks 4.93178 0.0 19.6497    
cufflinks 0.687        
cufflinks 0.509        
cufflinks 1.947        
cufflinks 0.742        
cufflinks 0.482        
cufflinks 0.38       Low
cufflinks 2.376       High
cufflinks 0.664        
cufflinks 1.238        
cufflinks 1.287        
cufflinks 3.479       High
cufflinks 0.499        
cufflinks 2.706       High
cufflinks 2.431       High
cufflinks 0.502        
cufflinks 3.027       High
cufflinks 0.471       Low

0 Strain