Gene : Glyma.16G157900 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR12161:SF21 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  1579
Name:  ? Glyma.16G157900 Secondary Identifier:  ? PAC:30560031
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G157900 0.5kb upstream 0.5kb upstream 5234 true Chr16: 31837059-31842292 Glycine max
Glyma.16G157900 0.5kb upstream 0.5kb upstream 500 false Chr16: 31837059-31837558 Glycine max
Glyma.16G157900 0.5kb downstream 0.5kb downstream 5234 true Chr16: 31837559-31842792 Glycine max
Glyma.16G157900 0.5kb downstream 0.5kb downstream 500 false Chr16: 31842293-31842792 Glycine max
Glyma.16G157900 1.0kb upstream 1.0kb upstream 5734 true Chr16: 31836559-31842292 Glycine max
Glyma.16G157900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 31836559-31837558 Glycine max
Glyma.16G157900 1.0kb downstream 1.0kb downstream 5734 true Chr16: 31837559-31843292 Glycine max
Glyma.16G157900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 31842293-31843292 Glycine max
Glyma.16G157900 2.0kb upstream 2.0kb upstream 6734 true Chr16: 31835559-31842292 Glycine max
Glyma.16G157900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 31835559-31837558 Glycine max
Glyma.16G157900 2.0kb downstream 2.0kb downstream 6734 true Chr16: 31837559-31844292 Glycine max
Glyma.16G157900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 31842293-31844292 Glycine max
Glyma.16G157900 5.0kb upstream 5.0kb upstream 9734 true Chr16: 31832559-31842292 Glycine max
Glyma.16G157900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 31832559-31837558 Glycine max
Glyma.16G157900 5.0kb downstream 5.0kb downstream 9734 true Chr16: 31837559-31847292 Glycine max
Glyma.16G157900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 31842293-31847292 Glycine max
Glyma.16G157900 10.0kb upstream 10.0kb upstream 14734 true Chr16: 31827559-31842292 Glycine max
Glyma.16G157900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 31827559-31837558 Glycine max
Glyma.16G157900 10.0kb downstream 10.0kb downstream 14734 true Chr16: 31837559-31852292 Glycine max
Glyma.16G157900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 31842293-31852292 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301287 5265 Fabidae View MSA
124068076 5270 Rosid View MSA
123736868 5271 Pentapetalae View MSA
122789571 5272 Eudicot View MSA
122045314 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.83757 0.0 28.2257    
cufflinks 4.9181 0.0 16.5788   Low
cufflinks 9.45878 0.0 29.6115    
cufflinks 10.2528 0.0 31.6583    
cufflinks 6.85125 0.0 21.6023    
cufflinks 9.76555 0.0 31.4359    
cufflinks 8.36919 0.0 26.4495    
cufflinks 9.7327 0.0 30.8473    
cufflinks 6.72496 0.0 21.9821    
cufflinks 1.675        
cufflinks 1.728        
cufflinks 2.045       High
cufflinks 1.637        
cufflinks 0.953       Low
cufflinks 1.28        
cufflinks 1.108        
cufflinks 1.549        
cufflinks 1.761        
cufflinks 1.336        
cufflinks 1.11        
cufflinks 1.778        
cufflinks 1.176        
cufflinks 0.984       Low
cufflinks 1.811        
cufflinks 1.042       Low
cufflinks 1.901       High

0 Strain