Gene : Glyma.16G160200 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1602
Name:  ? Glyma.16G160200 Secondary Identifier:  ? PAC:30562261
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G160200 0.5kb upstream 0.5kb upstream 3472 true Chr16: 31969369-31972840 Glycine max
Glyma.16G160200 0.5kb upstream 0.5kb upstream 500 false Chr16: 31969369-31969868 Glycine max
Glyma.16G160200 0.5kb downstream 0.5kb downstream 3472 true Chr16: 31969869-31973340 Glycine max
Glyma.16G160200 0.5kb downstream 0.5kb downstream 500 false Chr16: 31972841-31973340 Glycine max
Glyma.16G160200 1.0kb upstream 1.0kb upstream 3972 true Chr16: 31968869-31972840 Glycine max
Glyma.16G160200 1.0kb upstream 1.0kb upstream 1000 false Chr16: 31968869-31969868 Glycine max
Glyma.16G160200 1.0kb downstream 1.0kb downstream 3972 true Chr16: 31969869-31973840 Glycine max
Glyma.16G160200 1.0kb downstream 1.0kb downstream 1000 false Chr16: 31972841-31973840 Glycine max
Glyma.16G160200 2.0kb upstream 2.0kb upstream 4972 true Chr16: 31967869-31972840 Glycine max
Glyma.16G160200 2.0kb upstream 2.0kb upstream 2000 false Chr16: 31967869-31969868 Glycine max
Glyma.16G160200 2.0kb downstream 2.0kb downstream 4972 true Chr16: 31969869-31974840 Glycine max
Glyma.16G160200 2.0kb downstream 2.0kb downstream 2000 false Chr16: 31972841-31974840 Glycine max
Glyma.16G160200 5.0kb upstream 5.0kb upstream 7972 true Chr16: 31964869-31972840 Glycine max
Glyma.16G160200 5.0kb upstream 5.0kb upstream 5000 false Chr16: 31964869-31969868 Glycine max
Glyma.16G160200 5.0kb downstream 5.0kb downstream 7972 true Chr16: 31969869-31977840 Glycine max
Glyma.16G160200 5.0kb downstream 5.0kb downstream 5000 false Chr16: 31972841-31977840 Glycine max
Glyma.16G160200 10.0kb upstream 10.0kb upstream 12972 true Chr16: 31959869-31972840 Glycine max
Glyma.16G160200 10.0kb upstream 10.0kb upstream 10000 false Chr16: 31959869-31969868 Glycine max
Glyma.16G160200 10.0kb downstream 10.0kb downstream 12972 true Chr16: 31969869-31982840 Glycine max
Glyma.16G160200 10.0kb downstream 10.0kb downstream 10000 false Chr16: 31972841-31982840 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.413996 0.0 1.53737    
cufflinks 1.10708 0.0 3.84412   High
cufflinks 0.436658 0.0 1.61142    
cufflinks 0.744436 0.0 2.66701    
cufflinks 0.325813 0.0 1.22469   Low
cufflinks 0.415204 0.0 1.54135    
cufflinks 0.585308 0.0 2.13473    
cufflinks 0.5819 0.0 2.1181    
cufflinks 0.429935 0.0 1.59243    
cufflinks 0.89        
cufflinks 0.112       Low
cufflinks 1.402        
cufflinks 0.583        
cufflinks 0.926        
cufflinks 0.172       Low
cufflinks 2.035        
cufflinks 0.062     Low Low
cufflinks 1.671        
cufflinks 2.032        
cufflinks 2.22        
cufflinks 0.137       Low
cufflinks 2.186        
cufflinks 2.293        
cufflinks 0.23        
cufflinks 1.876        
cufflinks 0.125       Low

0 Strain