Gene : Glyma.16G161900 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  1619
Name:  ? Glyma.16G161900 Secondary Identifier:  ? PAC:30560089
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G161900 0.5kb upstream 0.5kb upstream 7055 true Chr16: 32108307-32115361 Glycine max
Glyma.16G161900 0.5kb upstream 0.5kb upstream 500 false Chr16: 32108307-32108806 Glycine max
Glyma.16G161900 0.5kb downstream 0.5kb downstream 7055 true Chr16: 32108807-32115861 Glycine max
Glyma.16G161900 0.5kb downstream 0.5kb downstream 500 false Chr16: 32115362-32115861 Glycine max
Glyma.16G161900 1.0kb upstream 1.0kb upstream 7555 true Chr16: 32107807-32115361 Glycine max
Glyma.16G161900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 32107807-32108806 Glycine max
Glyma.16G161900 1.0kb downstream 1.0kb downstream 7555 true Chr16: 32108807-32116361 Glycine max
Glyma.16G161900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 32115362-32116361 Glycine max
Glyma.16G161900 2.0kb upstream 2.0kb upstream 8555 true Chr16: 32106807-32115361 Glycine max
Glyma.16G161900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 32106807-32108806 Glycine max
Glyma.16G161900 2.0kb downstream 2.0kb downstream 8555 true Chr16: 32108807-32117361 Glycine max
Glyma.16G161900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 32115362-32117361 Glycine max
Glyma.16G161900 5.0kb upstream 5.0kb upstream 11555 true Chr16: 32103807-32115361 Glycine max
Glyma.16G161900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 32103807-32108806 Glycine max
Glyma.16G161900 5.0kb downstream 5.0kb downstream 11555 true Chr16: 32108807-32120361 Glycine max
Glyma.16G161900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 32115362-32120361 Glycine max
Glyma.16G161900 10.0kb upstream 10.0kb upstream 16555 true Chr16: 32098807-32115361 Glycine max
Glyma.16G161900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 32098807-32108806 Glycine max
Glyma.16G161900 10.0kb downstream 10.0kb downstream 16555 true Chr16: 32108807-32125361 Glycine max
Glyma.16G161900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 32115362-32125361 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.20529 0.0 6.50178    
cufflinks 2.18769 0.0 9.68928   High
cufflinks 1.17008 0.0 6.31629    
cufflinks 2.06294 0.0 11.405   High
cufflinks 0.959023 0.0 5.35513   Low
cufflinks 0.96662 0.0 5.37224   Low
cufflinks 1.76731 0.0 8.76906    
cufflinks 1.35273 0.0 8.29088    
cufflinks 1.70496 0.0 8.43068    
cufflinks 0.112        
cufflinks 0.014     Low Low
cufflinks 0.184        
cufflinks 0.092     Low  
cufflinks 0.128        
cufflinks 0.054        
cufflinks 0.154        
cufflinks 0.019     Low Low
cufflinks 0.253       High
cufflinks 0.223       High
cufflinks 0.15        
cufflinks 0.02     Low Low
cufflinks 0.183        
cufflinks 0.185        
cufflinks 0.041     Low  
cufflinks 0.158        
cufflinks 0.028     Low Low

0 Strain