Gene : Glyma.16G145800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21649:SF7 - CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC Genomic Order:  1458
Name:  ? Glyma.16G145800 Secondary Identifier:  ? PAC:30561763
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G145800 0.5kb upstream 0.5kb upstream 2890 true Chr16: 30676670-30679559 Glycine max
Glyma.16G145800 0.5kb upstream 0.5kb upstream 500 false Chr16: 30676670-30677169 Glycine max
Glyma.16G145800 0.5kb downstream 0.5kb downstream 2890 true Chr16: 30677170-30680059 Glycine max
Glyma.16G145800 0.5kb downstream 0.5kb downstream 500 false Chr16: 30679560-30680059 Glycine max
Glyma.16G145800 1.0kb upstream 1.0kb upstream 3390 true Chr16: 30676170-30679559 Glycine max
Glyma.16G145800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 30676170-30677169 Glycine max
Glyma.16G145800 1.0kb downstream 1.0kb downstream 3390 true Chr16: 30677170-30680559 Glycine max
Glyma.16G145800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 30679560-30680559 Glycine max
Glyma.16G145800 2.0kb upstream 2.0kb upstream 4390 true Chr16: 30675170-30679559 Glycine max
Glyma.16G145800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 30675170-30677169 Glycine max
Glyma.16G145800 2.0kb downstream 2.0kb downstream 4390 true Chr16: 30677170-30681559 Glycine max
Glyma.16G145800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 30679560-30681559 Glycine max
Glyma.16G145800 5.0kb upstream 5.0kb upstream 7390 true Chr16: 30672170-30679559 Glycine max
Glyma.16G145800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 30672170-30677169 Glycine max
Glyma.16G145800 5.0kb downstream 5.0kb downstream 7390 true Chr16: 30677170-30684559 Glycine max
Glyma.16G145800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 30679560-30684559 Glycine max
Glyma.16G145800 10.0kb upstream 10.0kb upstream 12390 true Chr16: 30667170-30679559 Glycine max
Glyma.16G145800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 30667170-30677169 Glycine max
Glyma.16G145800 10.0kb downstream 10.0kb downstream 12390 true Chr16: 30677170-30689559 Glycine max
Glyma.16G145800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 30679560-30689559 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301540 5265 Fabidae View MSA
124067443 5270 Rosid View MSA
123742778 5271 Pentapetalae View MSA
122793443 5272 Eudicot View MSA
122044861 5273 Angiosperm View MSA
121344658 5274 Embryophyte View MSA
123424228 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 347.931 0.0 1282.95 High High
cufflinks 355.223 0.0 1314.42 High High
cufflinks 83.7221 0.0 236.396 High  
cufflinks 209.586 0.0 686.099 High  
cufflinks 8.61837 0.0 24.7972   Low
cufflinks 9.99779 0.0 28.2956   Low
cufflinks 153.405 0.0 473.888 High  
cufflinks 175.756 0.0 557.784 High  
cufflinks 9.70815 0.0 27.5616   Low
cufflinks 84.298     High  
cufflinks 0.038     Low Low
cufflinks 61.508     High  
cufflinks 0.115        
cufflinks 0.069     Low  
cufflinks 0.113        
cufflinks 252.253     High High
cufflinks 0.088        
cufflinks 62.049     High  
cufflinks 92.648     High  
cufflinks 292.383     High High
cufflinks 0.044     Low Low
cufflinks 303.884     High High
cufflinks 267.518     High High
cufflinks 0.017     Low Low
cufflinks 275.561     High High
cufflinks 0.064     Low  

0 Strain