Gene : Glyma.16G141300 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31636:SF53 - SCARECROW-LIKE PROTEIN 15 Genomic Order:  1413
Name:  ? Glyma.16G141300 Secondary Identifier:  ? PAC:30559334
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G141300 0.5kb upstream 0.5kb upstream 2794 true Chr16: 29936544-29939337 Glycine max
Glyma.16G141300 0.5kb upstream 0.5kb upstream 500 false Chr16: 29936544-29937043 Glycine max
Glyma.16G141300 0.5kb downstream 0.5kb downstream 2794 true Chr16: 29937044-29939837 Glycine max
Glyma.16G141300 0.5kb downstream 0.5kb downstream 500 false Chr16: 29939338-29939837 Glycine max
Glyma.16G141300 1.0kb upstream 1.0kb upstream 3294 true Chr16: 29936044-29939337 Glycine max
Glyma.16G141300 1.0kb upstream 1.0kb upstream 1000 false Chr16: 29936044-29937043 Glycine max
Glyma.16G141300 1.0kb downstream 1.0kb downstream 3294 true Chr16: 29937044-29940337 Glycine max
Glyma.16G141300 1.0kb downstream 1.0kb downstream 1000 false Chr16: 29939338-29940337 Glycine max
Glyma.16G141300 2.0kb upstream 2.0kb upstream 4294 true Chr16: 29935044-29939337 Glycine max
Glyma.16G141300 2.0kb upstream 2.0kb upstream 2000 false Chr16: 29935044-29937043 Glycine max
Glyma.16G141300 2.0kb downstream 2.0kb downstream 4294 true Chr16: 29937044-29941337 Glycine max
Glyma.16G141300 2.0kb downstream 2.0kb downstream 2000 false Chr16: 29939338-29941337 Glycine max
Glyma.16G141300 5.0kb upstream 5.0kb upstream 7294 true Chr16: 29932044-29939337 Glycine max
Glyma.16G141300 5.0kb upstream 5.0kb upstream 5000 false Chr16: 29932044-29937043 Glycine max
Glyma.16G141300 5.0kb downstream 5.0kb downstream 7294 true Chr16: 29937044-29944337 Glycine max
Glyma.16G141300 5.0kb downstream 5.0kb downstream 5000 false Chr16: 29939338-29944337 Glycine max
Glyma.16G141300 10.0kb upstream 10.0kb upstream 12294 true Chr16: 29927044-29939337 Glycine max
Glyma.16G141300 10.0kb upstream 10.0kb upstream 10000 false Chr16: 29927044-29937043 Glycine max
Glyma.16G141300 10.0kb downstream 10.0kb downstream 12294 true Chr16: 29937044-29949337 Glycine max
Glyma.16G141300 10.0kb downstream 10.0kb downstream 10000 false Chr16: 29939338-29949337 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310795 5265 Fabidae View MSA
124061987 5270 Rosid View MSA
123738804 5271 Pentapetalae View MSA
122792539 5272 Eudicot View MSA
122048418 5273 Angiosperm View MSA
121350524 5274 Embryophyte View MSA
123381771 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.61515 0.0 10.5272    
cufflinks 0.588831 0.0 2.12511    
cufflinks 10.7747 0.0 28.9086   High
cufflinks 1.87493 0.0 6.00772    
cufflinks 1.15344 0.0 3.89649    
cufflinks 0.0855682 0.0 0.337147 Low Low
cufflinks 1.02359 0.0 3.51398    
cufflinks 5.49408 0.0 15.2971    
cufflinks 0.859816 0.0 3.00797    
cufflinks 2.861        
cufflinks 7.147     High High
cufflinks 7.416     High High
cufflinks 0.768        
cufflinks 0.259       Low
cufflinks 0.672        
cufflinks 1.483        
cufflinks 2.335        
cufflinks 3.861        
cufflinks 0.466       Low
cufflinks 1.246        
cufflinks 5.189       High
cufflinks 1.321        
cufflinks 1.049        
cufflinks 7.514     High High
cufflinks 1.193        
cufflinks 2.591        

0 Strain