Gene : Glyma.16G142800 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11850//PTHR11850:SF103 - HOMEOBOX PROTEIN TRANSCRIPTION FACTORS Genomic Order:  1428
Name:  ? Glyma.16G142800 Secondary Identifier:  ? PAC:30560714
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G142800 0.5kb upstream 0.5kb upstream 9127 true Chr16: 30200967-30210093 Glycine max
Glyma.16G142800 0.5kb upstream 0.5kb upstream 500 false Chr16: 30200967-30201466 Glycine max
Glyma.16G142800 0.5kb downstream 0.5kb downstream 9127 true Chr16: 30201467-30210593 Glycine max
Glyma.16G142800 0.5kb downstream 0.5kb downstream 500 false Chr16: 30210094-30210593 Glycine max
Glyma.16G142800 1.0kb upstream 1.0kb upstream 9627 true Chr16: 30200467-30210093 Glycine max
Glyma.16G142800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 30200467-30201466 Glycine max
Glyma.16G142800 1.0kb downstream 1.0kb downstream 9627 true Chr16: 30201467-30211093 Glycine max
Glyma.16G142800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 30210094-30211093 Glycine max
Glyma.16G142800 2.0kb upstream 2.0kb upstream 10627 true Chr16: 30199467-30210093 Glycine max
Glyma.16G142800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 30199467-30201466 Glycine max
Glyma.16G142800 2.0kb downstream 2.0kb downstream 10627 true Chr16: 30201467-30212093 Glycine max
Glyma.16G142800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 30210094-30212093 Glycine max
Glyma.16G142800 5.0kb upstream 5.0kb upstream 13627 true Chr16: 30196467-30210093 Glycine max
Glyma.16G142800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 30196467-30201466 Glycine max
Glyma.16G142800 5.0kb downstream 5.0kb downstream 13627 true Chr16: 30201467-30215093 Glycine max
Glyma.16G142800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 30210094-30215093 Glycine max
Glyma.16G142800 10.0kb upstream 10.0kb upstream 18627 true Chr16: 30191467-30210093 Glycine max
Glyma.16G142800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 30191467-30201466 Glycine max
Glyma.16G142800 10.0kb downstream 10.0kb downstream 18627 true Chr16: 30201467-30220093 Glycine max
Glyma.16G142800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 30210094-30220093 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299494 5265 Fabidae View MSA
124067451 5270 Rosid View MSA
123743533 5271 Pentapetalae View MSA
122796182 5272 Eudicot View MSA
122049932 5273 Angiosperm View MSA
121350603 5274 Embryophyte View MSA
123426094 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.5177 0.0 48.4088   High
cufflinks 3.22095 0.0 10.559    
cufflinks 2.61566 0.0 11.0411    
cufflinks 1.73796 0.0 6.91863   Low
cufflinks 5.47285 0.0 19.7991    
cufflinks 9.63075 0.0 34.01    
cufflinks 14.1116 0.0 51.7436   High
cufflinks 2.545 0.0 8.74545    
cufflinks 10.837 0.0 39.4574    
cufflinks 0.065     Low Low
cufflinks 1.895        
cufflinks 0.734        
cufflinks 0.406        
cufflinks 0.024     Low Low
cufflinks 3.233        
cufflinks 3.938        
cufflinks 0.775        
cufflinks 1.29        
cufflinks 0.694        
cufflinks 5.303       High
cufflinks 1.79        
cufflinks 4.15        
cufflinks 2.202        
cufflinks 3.173        
cufflinks 4.08        
cufflinks 1.112        

0 Strain