Gene : Glyma.16G203400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR13483:SF3 - BOX C/D SNORNA PROTEIN 1 Genomic Order:  2034
Name:  ? Glyma.16G203400 Secondary Identifier:  ? PAC:30562051
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G203400 0.5kb upstream 0.5kb upstream 3015 true Chr16: 36448521-36451535 Glycine max
Glyma.16G203400 0.5kb upstream 0.5kb upstream 500 false Chr16: 36448521-36449020 Glycine max
Glyma.16G203400 0.5kb downstream 0.5kb downstream 3015 true Chr16: 36449021-36452035 Glycine max
Glyma.16G203400 0.5kb downstream 0.5kb downstream 500 false Chr16: 36451536-36452035 Glycine max
Glyma.16G203400 1.0kb upstream 1.0kb upstream 3515 true Chr16: 36448021-36451535 Glycine max
Glyma.16G203400 1.0kb upstream 1.0kb upstream 1000 false Chr16: 36448021-36449020 Glycine max
Glyma.16G203400 1.0kb downstream 1.0kb downstream 3515 true Chr16: 36449021-36452535 Glycine max
Glyma.16G203400 1.0kb downstream 1.0kb downstream 1000 false Chr16: 36451536-36452535 Glycine max
Glyma.16G203400 2.0kb upstream 2.0kb upstream 4515 true Chr16: 36447021-36451535 Glycine max
Glyma.16G203400 2.0kb upstream 2.0kb upstream 2000 false Chr16: 36447021-36449020 Glycine max
Glyma.16G203400 2.0kb downstream 2.0kb downstream 4515 true Chr16: 36449021-36453535 Glycine max
Glyma.16G203400 2.0kb downstream 2.0kb downstream 2000 false Chr16: 36451536-36453535 Glycine max
Glyma.16G203400 5.0kb upstream 5.0kb upstream 7515 true Chr16: 36444021-36451535 Glycine max
Glyma.16G203400 5.0kb upstream 5.0kb upstream 5000 false Chr16: 36444021-36449020 Glycine max
Glyma.16G203400 5.0kb downstream 5.0kb downstream 7515 true Chr16: 36449021-36456535 Glycine max
Glyma.16G203400 5.0kb downstream 5.0kb downstream 5000 false Chr16: 36451536-36456535 Glycine max
Glyma.16G203400 10.0kb upstream 10.0kb upstream 12515 true Chr16: 36439021-36451535 Glycine max
Glyma.16G203400 10.0kb upstream 10.0kb upstream 10000 false Chr16: 36439021-36449020 Glycine max
Glyma.16G203400 10.0kb downstream 10.0kb downstream 12515 true Chr16: 36449021-36461535 Glycine max
Glyma.16G203400 10.0kb downstream 10.0kb downstream 10000 false Chr16: 36451536-36461535 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307520 5265 Fabidae View MSA
124062836 5270 Rosid View MSA
123736967 5271 Pentapetalae View MSA
122789641 5272 Eudicot View MSA
122043413 5273 Angiosperm View MSA
121347000 5274 Embryophyte View MSA
123426353 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.10664 0.0 18.0285    
cufflinks 1.58722 0.0 6.31351   Low
cufflinks 1.75283 0.0 6.73957   Low
cufflinks 3.0036 0.0 10.065    
cufflinks 4.52254 0.0 18.7402   High
cufflinks 2.82802 0.0 13.7426    
cufflinks 3.77835 0.0 16.854    
cufflinks 3.81703 0.0 11.7612    
cufflinks 3.19955 0.0 10.5661    
cufflinks 0.58        
cufflinks 0.061       Low
cufflinks 0.785        
cufflinks 1.825       High
cufflinks 3.477       High
cufflinks 0.201        
cufflinks 0.364        
cufflinks 0.402        
cufflinks 0.576        
cufflinks 0.492        
cufflinks 0.35        
cufflinks 0.096       Low
cufflinks 0.51        
cufflinks 0.904        
cufflinks 0.126       Low
cufflinks 0.413        
cufflinks 0.224        

0 Strain