Gene : Glyma.16G178700 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12802:SF49 - PROTEIN REVEILLE 3-RELATED Genomic Order:  1787
Name:  ? Glyma.16G178700 Secondary Identifier:  ? PAC:30561090
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G178700 0.5kb upstream 0.5kb upstream 7659 true Chr16: 33941117-33948775 Glycine max
Glyma.16G178700 0.5kb upstream 0.5kb upstream 500 false Chr16: 33941117-33941616 Glycine max
Glyma.16G178700 0.5kb downstream 0.5kb downstream 7659 true Chr16: 33941617-33949275 Glycine max
Glyma.16G178700 0.5kb downstream 0.5kb downstream 500 false Chr16: 33948776-33949275 Glycine max
Glyma.16G178700 1.0kb upstream 1.0kb upstream 8159 true Chr16: 33940617-33948775 Glycine max
Glyma.16G178700 1.0kb upstream 1.0kb upstream 1000 false Chr16: 33940617-33941616 Glycine max
Glyma.16G178700 1.0kb downstream 1.0kb downstream 8159 true Chr16: 33941617-33949775 Glycine max
Glyma.16G178700 1.0kb downstream 1.0kb downstream 1000 false Chr16: 33948776-33949775 Glycine max
Glyma.16G178700 2.0kb upstream 2.0kb upstream 9159 true Chr16: 33939617-33948775 Glycine max
Glyma.16G178700 2.0kb upstream 2.0kb upstream 2000 false Chr16: 33939617-33941616 Glycine max
Glyma.16G178700 2.0kb downstream 2.0kb downstream 9159 true Chr16: 33941617-33950775 Glycine max
Glyma.16G178700 2.0kb downstream 2.0kb downstream 2000 false Chr16: 33948776-33950775 Glycine max
Glyma.16G178700 5.0kb upstream 5.0kb upstream 12159 true Chr16: 33936617-33948775 Glycine max
Glyma.16G178700 5.0kb upstream 5.0kb upstream 5000 false Chr16: 33936617-33941616 Glycine max
Glyma.16G178700 5.0kb downstream 5.0kb downstream 12159 true Chr16: 33941617-33953775 Glycine max
Glyma.16G178700 5.0kb downstream 5.0kb downstream 5000 false Chr16: 33948776-33953775 Glycine max
Glyma.16G178700 10.0kb upstream 10.0kb upstream 17159 true Chr16: 33931617-33948775 Glycine max
Glyma.16G178700 10.0kb upstream 10.0kb upstream 10000 false Chr16: 33931617-33941616 Glycine max
Glyma.16G178700 10.0kb downstream 10.0kb downstream 17159 true Chr16: 33941617-33958775 Glycine max
Glyma.16G178700 10.0kb downstream 10.0kb downstream 10000 false Chr16: 33948776-33958775 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298993 5265 Fabidae View MSA
124066393 5270 Rosid View MSA
123747099 5271 Pentapetalae View MSA
122797418 5272 Eudicot View MSA
122043190 5273 Angiosperm View MSA
121350765 5274 Embryophyte View MSA
123427162 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.88935 0.0 17.2975    
cufflinks 4.09064 0.0 12.6249   Low
cufflinks 10.9972 0.0 30.2045   High
cufflinks 6.11909 0.0 17.8531    
cufflinks 4.7383 0.0 14.3031    
cufflinks 6.28707 0.0 18.2792    
cufflinks 4.3403 0.0 13.3171    
cufflinks 5.99307 0.0 17.5106    
cufflinks 4.19007 0.0 12.8656    
cufflinks 0.992        
cufflinks 0.955        
cufflinks 1.486       High
cufflinks 1.009        
cufflinks 0.585       Low
cufflinks 0.412       Low
cufflinks 1.359        
cufflinks 1.223        
cufflinks 1.186        
cufflinks 0.944        
cufflinks 1.173        
cufflinks 0.814        
cufflinks 1.177        
cufflinks 1.256        
cufflinks 1.097        
cufflinks 1.211        
cufflinks 1.278        

0 Strain