Gene : Glyma.16G179800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR11451//PTHR11451:SF6 - TRNA SYNTHETASE-RELATED Genomic Order:  1798
Name:  ? Glyma.16G179800 Secondary Identifier:  ? PAC:30561115
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax TRNA-CHARGING-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G179800 0.5kb upstream 0.5kb upstream 5076 true Chr16: 34022480-34027555 Glycine max
Glyma.16G179800 0.5kb upstream 0.5kb upstream 500 false Chr16: 34027056-34027555 Glycine max
Glyma.16G179800 0.5kb downstream 0.5kb downstream 5076 true Chr16: 34021980-34027055 Glycine max
Glyma.16G179800 0.5kb downstream 0.5kb downstream 500 false Chr16: 34021980-34022479 Glycine max
Glyma.16G179800 1.0kb upstream 1.0kb upstream 5576 true Chr16: 34022480-34028055 Glycine max
Glyma.16G179800 1.0kb upstream 1.0kb upstream 1000 false Chr16: 34027056-34028055 Glycine max
Glyma.16G179800 1.0kb downstream 1.0kb downstream 5576 true Chr16: 34021480-34027055 Glycine max
Glyma.16G179800 1.0kb downstream 1.0kb downstream 1000 false Chr16: 34021480-34022479 Glycine max
Glyma.16G179800 2.0kb upstream 2.0kb upstream 6576 true Chr16: 34022480-34029055 Glycine max
Glyma.16G179800 2.0kb upstream 2.0kb upstream 2000 false Chr16: 34027056-34029055 Glycine max
Glyma.16G179800 2.0kb downstream 2.0kb downstream 6576 true Chr16: 34020480-34027055 Glycine max
Glyma.16G179800 2.0kb downstream 2.0kb downstream 2000 false Chr16: 34020480-34022479 Glycine max
Glyma.16G179800 5.0kb upstream 5.0kb upstream 9576 true Chr16: 34022480-34032055 Glycine max
Glyma.16G179800 5.0kb upstream 5.0kb upstream 5000 false Chr16: 34027056-34032055 Glycine max
Glyma.16G179800 5.0kb downstream 5.0kb downstream 9576 true Chr16: 34017480-34027055 Glycine max
Glyma.16G179800 5.0kb downstream 5.0kb downstream 5000 false Chr16: 34017480-34022479 Glycine max
Glyma.16G179800 10.0kb upstream 10.0kb upstream 14576 true Chr16: 34022480-34037055 Glycine max
Glyma.16G179800 10.0kb upstream 10.0kb upstream 10000 false Chr16: 34027056-34037055 Glycine max
Glyma.16G179800 10.0kb downstream 10.0kb downstream 14576 true Chr16: 34012480-34027055 Glycine max
Glyma.16G179800 10.0kb downstream 10.0kb downstream 10000 false Chr16: 34012480-34022479 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308637 5265 Fabidae View MSA
124067863 5270 Rosid View MSA
123737640 5271 Pentapetalae View MSA
122793581 5272 Eudicot View MSA
122044069 5273 Angiosperm View MSA
121345199 5274 Embryophyte View MSA
123428629 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.417 0.0 41.1311   High
cufflinks 3.93154 0.0 11.4939    
cufflinks 4.9205 0.0 13.9739    
cufflinks 3.58977 0.0 10.6086    
cufflinks 5.2612 0.0 14.8395    
cufflinks 4.27107 0.0 12.3347    
cufflinks 1.75663 0.0 5.75424   Low
cufflinks 5.20984 0.0 14.7148    
cufflinks 6.15023 0.0 17.087    
cufflinks 2.245        
cufflinks 1.964       Low
cufflinks 3.662        
cufflinks 2.973        
cufflinks 3.827        
cufflinks 7.385     High  
cufflinks 9.756     High High
cufflinks 1.955       Low
cufflinks 3.51        
cufflinks 3.372        
cufflinks 9.701     High High
cufflinks 3.007        
cufflinks 9.052     High High
cufflinks 9.632     High High
cufflinks 1.956       Low
cufflinks 10.788     High High
cufflinks 2.048       Low

0 Strain