Gene : Glyma.17G002000 G. max Wm82.a2.v1
Defline:  (1 of 1) PF08623//PF13646 - TATA-binding protein interacting (TIP20) (TIP120) // HEAT repeats (HEAT_2) Genomic Order:  20
Name:  ? Glyma.17G002000 Secondary Identifier:  ? PAC:30479382
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.17G002000 0.5kb upstream 0.5kb upstream 11928   true Chr17: 229315-241242 Glycine max
Glyma.17G002000 0.5kb upstream 0.5kb upstream 500   false Chr17: 240743-241242 Glycine max
Glyma.17G002000 0.5kb downstream 0.5kb downstream 11928   true Chr17: 228815-240742 Glycine max
Glyma.17G002000 0.5kb downstream 0.5kb downstream 500   false Chr17: 228815-229314 Glycine max
Glyma.17G002000 1.0kb upstream 1.0kb upstream 12428   true Chr17: 229315-241742 Glycine max
Glyma.17G002000 1.0kb upstream 1.0kb upstream 1000   false Chr17: 240743-241742 Glycine max
Glyma.17G002000 1.0kb downstream 1.0kb downstream 12428   true Chr17: 228315-240742 Glycine max
Glyma.17G002000 1.0kb downstream 1.0kb downstream 1000   false Chr17: 228315-229314 Glycine max
Glyma.17G002000 2.0kb upstream 2.0kb upstream 13428   true Chr17: 229315-242742 Glycine max
Glyma.17G002000 2.0kb upstream 2.0kb upstream 2000   false Chr17: 240743-242742 Glycine max
Glyma.17G002000 2.0kb downstream 2.0kb downstream 13428   true Chr17: 227315-240742 Glycine max
Glyma.17G002000 2.0kb downstream 2.0kb downstream 2000   false Chr17: 227315-229314 Glycine max
Glyma.17G002000 5.0kb upstream 5.0kb upstream 16428   true Chr17: 229315-245742 Glycine max
Glyma.17G002000 5.0kb upstream 5.0kb upstream 5000   false Chr17: 240743-245742 Glycine max
Glyma.17G002000 5.0kb downstream 5.0kb downstream 16428   true Chr17: 224315-240742 Glycine max
Glyma.17G002000 5.0kb downstream 5.0kb downstream 5000   false Chr17: 224315-229314 Glycine max
Glyma.17G002000 10.0kb upstream 10.0kb upstream 21428   true Chr17: 229315-250742 Glycine max
Glyma.17G002000 10.0kb upstream 10.0kb upstream 10000   false Chr17: 240743-250742 Glycine max
Glyma.17G002000 10.0kb downstream 10.0kb downstream 21428   true Chr17: 219315-240742 Glycine max
Glyma.17G002000 10.0kb downstream 10.0kb downstream 10000   false Chr17: 219315-229314 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299813 5265 Fabidae View MSA
124064777 5270 Rosid View MSA
123736693 5271 Pentapetalae View MSA
122792055 5272 Eudicot View MSA
122049783 5273 Angiosperm View MSA
121344585 5274 Embryophyte View MSA
123423876 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.6015 0.0 39.9152    
cufflinks 15.6294 0.0 43.0205    
cufflinks 13.7357 0.0 37.5293    
cufflinks 15.8165 0.0 43.5842    
cufflinks 13.8211 0.0 37.6084    
cufflinks 9.59472 0.0 25.6925   Low
cufflinks 20.223 0.0 56.8561   High
cufflinks 11.7995 0.0 31.8667    
cufflinks 14.8571 0.0 40.7084    
cufflinks 5.765        
cufflinks 2.981       Low
cufflinks 6.444        
cufflinks 7.267     High  
cufflinks 8.097     High High
cufflinks 4.266        
cufflinks 6.624        
cufflinks 3.5       Low
cufflinks 7.866     High High
cufflinks 7.65     High  
cufflinks 6.961     High  
cufflinks 3.576       Low
cufflinks 6.977        
cufflinks 6.032        
cufflinks 3.308       Low
cufflinks 6.72        
cufflinks 3.693       Low

0 Strain