Gene : Glyma.16G221900 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31852:SF43 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Genomic Order:  2219
Name:  ? Glyma.16G221900 Secondary Identifier:  ? PAC:30558899
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G221900 0.5kb upstream 0.5kb upstream 2093 true Chr16: 37848866-37850958 Glycine max
Glyma.16G221900 0.5kb upstream 0.5kb upstream 500 false Chr16: 37850459-37850958 Glycine max
Glyma.16G221900 0.5kb downstream 0.5kb downstream 2093 true Chr16: 37848366-37850458 Glycine max
Glyma.16G221900 0.5kb downstream 0.5kb downstream 500 false Chr16: 37848366-37848865 Glycine max
Glyma.16G221900 1.0kb upstream 1.0kb upstream 2593 true Chr16: 37848866-37851458 Glycine max
Glyma.16G221900 1.0kb upstream 1.0kb upstream 1000 false Chr16: 37850459-37851458 Glycine max
Glyma.16G221900 1.0kb downstream 1.0kb downstream 2593 true Chr16: 37847866-37850458 Glycine max
Glyma.16G221900 1.0kb downstream 1.0kb downstream 1000 false Chr16: 37847866-37848865 Glycine max
Glyma.16G221900 2.0kb upstream 2.0kb upstream 3593 true Chr16: 37848866-37852458 Glycine max
Glyma.16G221900 2.0kb upstream 2.0kb upstream 2000 false Chr16: 37850459-37852458 Glycine max
Glyma.16G221900 2.0kb downstream 2.0kb downstream 3593 true Chr16: 37846866-37850458 Glycine max
Glyma.16G221900 2.0kb downstream 2.0kb downstream 2000 false Chr16: 37846866-37848865 Glycine max
Glyma.16G221900 5.0kb upstream 5.0kb upstream 6593 true Chr16: 37848866-37855458 Glycine max
Glyma.16G221900 5.0kb upstream 5.0kb upstream 5000 false Chr16: 37850459-37855458 Glycine max
Glyma.16G221900 5.0kb downstream 5.0kb downstream 6593 true Chr16: 37843866-37850458 Glycine max
Glyma.16G221900 5.0kb downstream 5.0kb downstream 5000 false Chr16: 37843866-37848865 Glycine max
Glyma.16G221900 10.0kb upstream 10.0kb upstream 11593 true Chr16: 37848866-37860458 Glycine max
Glyma.16G221900 10.0kb upstream 10.0kb upstream 10000 false Chr16: 37850459-37860458 Glycine max
Glyma.16G221900 10.0kb downstream 10.0kb downstream 11593 true Chr16: 37838866-37850458 Glycine max
Glyma.16G221900 10.0kb downstream 10.0kb downstream 10000 false Chr16: 37838866-37848865 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304861 5265 Fabidae View MSA
124068918 5270 Rosid View MSA
123743107 5271 Pentapetalae View MSA
122794839 5272 Eudicot View MSA
122049772 5273 Angiosperm View MSA
121350992 5274 Embryophyte View MSA
123381962 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.674232 0.0 3.36786    
cufflinks 0.467384 0.0 3.15751   Low
cufflinks 0.514432 0.0 3.42164   Low
cufflinks 2.12942 0.0 11.2825   High
cufflinks 0.998472 0.0 4.54179    
cufflinks 0.488614 0.0 3.23019   Low
cufflinks 1.54809 0.0 6.81227    
cufflinks 1.42152 0.0 8.13585    
cufflinks 1.28201 0.0 7.73693    
cufflinks 0.253        
cufflinks 0.042     Low Low
cufflinks 0.188        
cufflinks 0.233        
cufflinks 0.214        
cufflinks 0.174        
cufflinks 0.106        
cufflinks 0.337       High
cufflinks 0.64       High
cufflinks 0.354       High
cufflinks 0.044     Low Low
cufflinks 0.125        
cufflinks 0.093     Low  
cufflinks 0.068     Low Low
cufflinks 0.152        
cufflinks 0.072     Low  
cufflinks 0.101        

0 Strain