Gene : Glyma.16G213500 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR22763:SF5 - E3 UBIQUITIN-PROTEIN LIGASE CIP8 Genomic Order:  2135
Name:  ? Glyma.16G213500 Secondary Identifier:  ? PAC:30559763
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.16G213500 0.5kb upstream 0.5kb upstream 4743 true Chr16: 37154069-37158811 Glycine max
Glyma.16G213500 0.5kb upstream 0.5kb upstream 500 false Chr16: 37158312-37158811 Glycine max
Glyma.16G213500 0.5kb downstream 0.5kb downstream 4743 true Chr16: 37153569-37158311 Glycine max
Glyma.16G213500 0.5kb downstream 0.5kb downstream 500 false Chr16: 37153569-37154068 Glycine max
Glyma.16G213500 1.0kb upstream 1.0kb upstream 5243 true Chr16: 37154069-37159311 Glycine max
Glyma.16G213500 1.0kb upstream 1.0kb upstream 1000 false Chr16: 37158312-37159311 Glycine max
Glyma.16G213500 1.0kb downstream 1.0kb downstream 5243 true Chr16: 37153069-37158311 Glycine max
Glyma.16G213500 1.0kb downstream 1.0kb downstream 1000 false Chr16: 37153069-37154068 Glycine max
Glyma.16G213500 2.0kb upstream 2.0kb upstream 6243 true Chr16: 37154069-37160311 Glycine max
Glyma.16G213500 2.0kb upstream 2.0kb upstream 2000 false Chr16: 37158312-37160311 Glycine max
Glyma.16G213500 2.0kb downstream 2.0kb downstream 6243 true Chr16: 37152069-37158311 Glycine max
Glyma.16G213500 2.0kb downstream 2.0kb downstream 2000 false Chr16: 37152069-37154068 Glycine max
Glyma.16G213500 5.0kb upstream 5.0kb upstream 9243 true Chr16: 37154069-37163311 Glycine max
Glyma.16G213500 5.0kb upstream 5.0kb upstream 5000 false Chr16: 37158312-37163311 Glycine max
Glyma.16G213500 5.0kb downstream 5.0kb downstream 9243 true Chr16: 37149069-37158311 Glycine max
Glyma.16G213500 5.0kb downstream 5.0kb downstream 5000 false Chr16: 37149069-37154068 Glycine max
Glyma.16G213500 10.0kb upstream 10.0kb upstream 14243 true Chr16: 37154069-37168311 Glycine max
Glyma.16G213500 10.0kb upstream 10.0kb upstream 10000 false Chr16: 37158312-37168311 Glycine max
Glyma.16G213500 10.0kb downstream 10.0kb downstream 14243 true Chr16: 37144069-37158311 Glycine max
Glyma.16G213500 10.0kb downstream 10.0kb downstream 10000 false Chr16: 37144069-37154068 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299997 5265 Fabidae View MSA
124062824 5270 Rosid View MSA
123753393 5271 Pentapetalae View MSA
122788391 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.11656 0.0 24.6387    
cufflinks 4.64498 0.0 14.2065   Low
cufflinks 10.1951 0.0 33.2599   High
cufflinks 8.26185 0.0 27.8942    
cufflinks 7.17154 0.0 24.3976    
cufflinks 7.42161 0.0 25.2802    
cufflinks 4.93997 0.0 18.8354   Low
cufflinks 7.60259 0.0 26.199    
cufflinks 6.55924 0.0 23.2665    
cufflinks 2.15        
cufflinks 2.647       High
cufflinks 2.131        
cufflinks 1.802        
cufflinks 1.502       Low
cufflinks 3.792       High
cufflinks 2.094        
cufflinks 1.648       Low
cufflinks 1.903        
cufflinks 1.765        
cufflinks 2.259        
cufflinks 2.069        
cufflinks 2.115        
cufflinks 1.981        
cufflinks 2.302        
cufflinks 2.22        
cufflinks 1.944        

0 Strain